1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgtgcataatgcttgcttttactgactaacatattatcttcctattcatttatttttggctaatgtgcctcctgttaacctttcattttgtttacaatagGAGATATATGGGTCACAAAAGAACAATCAGACCAAATGCAAAGAAGCTTAGCACGCTATTGGCGGGAAGGCATCAAATGGACTGGGATACCTTTGCCAAA
species | Glycine max |
transcript | GLYMA11G03640.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTTGTTACTAACAACAATGGTAACATGGCAAAGATTCTCGCAGGTCGAAG GAGATAATAATAGGGTCACAAAAGAACAAEST: gi|193518827|gb|FK472310.1|FK472310
genomic: TTTGTTACTAACAACAATGGTAACATGGCAAAGATTCTCGCAGGTCGAAGgtaataatat ... tttacaatagGAGATA-TA-T-GGGTCACAAAAGAACAA
EST: TTTGTTACTAACAACAATGGTAACATGGCAAAGATTCTCGCAGGTCGAAG GAGATATATGGGTCACAAAAGAACAATCAGACCAAATGCAAAGAAGCTTAG
genomic: TTTGTTACTAACAACAATGGTAACATGGCAAAGATTCTCGCAGGTCGAAGgtaataatat ... tttacaatagGAGATATATGGGTCACAAAAGAACAATCAGACCAAATGCAAAGAAGCTTAG
tcatttatttttggctaatgtgcctcctgttaacctttcattttgtttacaatagGAGATATATGGGTCACAAAAGAACAATCAGACCAAATGCAAAGAAGCTTAGCACGCTATTGGCGGGAAGGCATCAAATGGACTGGGATACCTTTGCCAAA
tgttaac putative branch site (score: 2)
cctttcattttgttt CT-rich tract
attttgtttacaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgcataatgcttgcttttactgactaacatattatcttcctattcatttatttttggctaatgtgcctcctgttaacctttcattttgtttacaatagGAGATATATGGGTCACAAAAGAACAATCAGACCAAATGCAAAGAAGCTTAGCACGCTATTGGCGGGAAGGCATCAAATGGACTGGGATACCTTTGCCAAA
- tgcataa
- - - - - gcttgct
- - - - - - - - - -tactgac
- - - - - - - - - - - - - - - - - - -cttccta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctcc