Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagttattggttattagtggcaagtcacaattctttgcaacctgttctttatattattctatttatcttctctactccttaaatttcgcctgtctaaattccaaagtaacacattatctgctaagtcatttttttggttaacatctcattcattcagtgtgtatcccgcgttcaattagGTGCATGGATTTATCGAAGATGTAACAGGGAAAAAAGTTGCCACATTATTTGGCAAGTGGGATGACAGCATGTATTATATGAATGGCAATGTAAATGTCA

Basic information

species Glycine max
transcript GLYMA11G03420.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G03420.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv02s0154g00250.t01 (Vitis vinifera), 3'ss of exon 6
gtaagagttattggttattagtggcaagtcacaattctttgcaacctgttctttatattattctatttatcttctctactcct-taaatttcgcctgtctaaattccaaagtaacacattatctgctaagtcatttttttggttaacatctcattcattcagtgtgtatcccgcgttcaat-tagGTGCATGGATTTATCGAAGATGTAACAGGGAAAAAAGTTGCCACATTATTTGGCAAGTGGGATGACAGCATGTATTATATGAATGGCAATGTAAATGTCA
                       | ||| ||   | ||||| |||||  |||  ||||   | ||| |   | ||  |   || || |||     | || ||  |         || |||   || |      |||||  | ||   | |  | || || |   || | ||  | ||| ||  |||| ||||| ||| | || ||| | |||||| |||  | ||| ||  ||||||| |||||||||||||||||||||||  |   |||  |   || || ||
-----------------------gtaag-cattctactttggaacct-ctctgcatatgtatgtatctgcatgctgcatcactctatattgttattatccaatctgtt------caaatttagtgtt------tttttaggattgtgaccagaatcgtttaa-atggaacctactttctatgcagGTACATGGTTTTGTTGAGGATCTCACAGGGGAAAGGGCTGCTACCCTATTTGGGAAGTGGGATGACAGCATGTATTACGTTCTTGGAGACAGAACTGGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcatttttttggttaacatctcattcattcagtgtgtatcccgcgttcaattagGTGCATGGATTTATCGAAGATGTAACAGGGAAAAAAGTTGCCACATTATTTGGCAAGTGGGATGACAGCATGTATTATATGAATGGCAATGTAAATGTCA
           ggttaac  putative branch site (score: 3)
                                              ttcaatta  TA-rich tract