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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcctgctatatatgtatgtaattaattgttggcataaatctcatgacgggcacatatttggtaaaaaccttgtgtagAGTGCAAATTCAAGCCAAAGCAATATGCTGATACTTCAAGAGAGTTGCACAGATTCTACTGGCTCATATGTAGTTTATGCTCCTGTGGATATTGTTGCTA

Basic information

species Glycine max
transcript GLYMA11G00570.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G00570.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv10s0116g00680.t01 (Vitis vinifera), 3'ss of exon 9
-------gtaagttcctgctatat--atgtatgtaattaa-ttgttggcataaatct--------catgacgggcacatatttg-gtaaaaaccttg--------tgtagAGTGCAAATTCAAGCCAAAGCAATATGCTGATACTTCAAGAGAGTTGCACAGATTCTACTGGCTCATATGTAGTTTATGCTCCTGTGGATATTGTTGCTA
         |  | |||||  | |  ||||   | || || |  |   |||| ||||        ||    | |   | | |   ||   ||| |          |||||||||||||||| ||||| ||||| ||||||||||| |||||||| ||||| ||| |||| ||||| || ||  | || ||||| || || || ||||| |
gtaagttccatatgcctgccgtgtcaatgtcgatgatcaaatcataatcatatatctgaaactgtcactgtgcgactaaactaaagtgtgaacttcaaaataaactgtagAGTGCAAATTCGAGCCAGAGCAACATGCTGATACTACAAGAGAGCTGCACTGATCCTACCGGCTCTTACGTGATCTACGCTCCAGTTGACATCGTTGCCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattgttggcataaatctcatgacgggcacatatttggtaaaaaccttgtgtagAGTGCAAATTCAAGCCAAAGCAATATGCTGATACTTCAAGAGAGTTGCACAGATTCTACTGGCTCATATGTAGTTTATGCTCCTGTGGATATTGTTGCTA
 aattaat  putative branch site (score: 3)
                               atatttggtaaaaa  TA-rich tract