Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttttcttactcacatgtgtgcgatcagtttggtacatatttctcaaagaaaatgctctttcatacagcatttcatggcagattattgataacaaacatcactattaaaataacttggctctgtttatttttgtggtcatttgaaagGCTGACAACTTGCGCCAGCAGACGTTGCATCAAATTCACCGCATATTGACAACTCGGCAGTCGGCTCGTGCACTACTTGCAATACATGACTACTTTTCTA

Basic information

species Glycine max
transcript GLYMA10G44270.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G44270.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G361847_T04 (Zea mays), 3'ss of exon 9
gtatgcttttcttactcacatgtgtgcgatcagtttggtacatatttctcaaagaaaatgctctttcatacagcatttcatggcag-attattgataacaaacatcactattaaaataacttggctctgtttatttttgtggtcatttgaaagGCTGACAACTTGCGCCAGCAGACGTTGCATCAAATTCACCGCATATTGACAACTCGGCAGTCGGCTCGTGCACTACTTGCAATACATGACTACTTTTCTA
                                                     | ||    |||    |  | | ||    ||| | | | || ||        |  ||    || |  |       |  |||| ||| |  | || || | ||| |||||| |||| |||||||||||||||||||| || || ||  | || |  || ||| |  ||||||| || |||||||| || ||||| |||||  
-----------------------------------------------------gtaagca-tctactttgtatctttgtggggcggtactgtttat--ttggttttgctgcataagtttcg-aatagtaattatgttt-tatttatatgca-gGCCGACAACCTGCGACAGCAGACGTTGCATCAAATGCAACGTATCCTAACGATCCGACAGGCTTCTCGTGCTCTTCTTGCAATCCACGACTATTTTTCAC

upper sequence: GLYMA10G44270.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv13s0084g00660.t01 (Vitis vinifera), 3'ss of exon 11
gtatgcttttcttactcacatgtgtgcgatcagtttggtacatatttctcaaagaaaatgctctttcatacagcatttcatggcagattattgataacaaacatcactattaaaataacttggctctgtttatttttgtggtcatttgaaagGCTGACAACTTGCGCCAGCAGACGTTGCATCAAATTCACCGCATATTGACAACTCGGCAGTCGGCTCGTGCACTACTTGCAATACATGACTACTTTTCTA
                                        |     | |   | ||||  || || || | |  | | | ||     |  ||| || | |  ||  || |||||| |  |||    | || |||    |  | |||  |  |||||||||  | || || || ||| | || || || ||||||||| ||||||| || ||||| |||||||| || ||||| |||||||||||||| ||  
----------------------------------------ctagagtgttgtaaaaaacccttttgcacatacaaatccctg----ttctttggtatctataat--ctcttaaaa-agtttg---tttttcattgcactactaattcca--gGCTGACAATCTACGACAACAAACGCTACAACAGATGCACCGCATACTGACAACCCGCCAGTCAGCTCGTGCGCTCCTTGCTATACATGACTACTTCTCCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209723110|gb|BW662486.1|BW662486
EST:     TGGCTATGGCCATGGGTAAACTAGGGACACTTGAGGGATTCATTAAGCAG                         GCTGACAACTTGCGCCAGCAGACGTTGCATCAAATTCACCGCATATTGACA
genomic: TGGCTATGGCCATGGGTAAACTAGGGACACTTGAGGGATTCATTAAGCAGgtatgctttt ... catttgaaagGCTGACAACTTGCGCCAGCAGACGTTGCATCAAATTCACCGCATATTGACA
EST: gi|209706696|gb|BW676185.1|BW676185
EST:     TGGCTATGGCCATGGGTAAACTAGGGACACTTGAGGGATTCATTAAGCAG                         GCTGACAACTTGCGCCAGCAGACGTTGCATCAAATTCACCGCATATTGACA
genomic: TGGCTATGGCCATGGGTAAACTAGGGACACTTGAGGGATTCATTAAGCAGgtatgctttt ... catttgaaagGCTGACAACTTGCGCCAGCAGACGTTGCATCAAATTCACCGCATATTGACA
EST: gi|214005686|gb|DB990375.1|DB990375
EST:     TGGCTATGGCCATGGGTAAACTAGGGACACTTGAGGGATTCATTAAGCAG                         GCTGACAACTTGCGCCAGCAGACGTTGCATCAAATTCACCGCATATTGACA
genomic: TGGCTATGGCCATGGGTAAACTAGGGACACTTGAGGGATTCATTAAGCAGgtatgctttt ... catttgaaagGCTGACAACTTGCGCCAGCAGACGTTGCATCAAATTCACCGCATATTGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaacatcactattaaaataacttggctctgtttatttttgtggtcatttgaaagGCTGACAACTTGCGCCAGCAGACGTTGCATCAAATTCACCGCATATTGACAACTCGGCAGTCGGCTCGTGCACTACTTGCAATACATGACTACTTTTCTA
               aaataac  putative branch site (score: 2)
     atcactattaaaataa  TA-rich tract