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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtatcgatagatttcattaatcattttattttactgtctgtgccgaatgtttacatttctaacttgaattgtaaattacagAAAGAAGATAACATATCTTGCTCCGTCTGCTGGAGAACTTCCAAGCAAATATTTGATAATGGGATCCTTAACATGGCTTGAAACATGAGCTAATGAACAG

Basic information

species Glycine max
transcript GLYMA10G43930.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51335678|gb|CO979544.1|CO979544
EST:     CAATGTTGCTGGGTTTATTTATGTAACCGACATTGACATTCAGAG                         AAAGAAGATAACATATCTTGCTCCGTCTGCTGGAGAACTTCCAAGCAAATA
genomic: CAATGTTGCTGGGTTTATTTATGTAACCGACATTGACATTCAGAGgtttgtatcg ... taaattacagAAAGAAGATAACATATCTTGCTCCGTCTGCTGGAGAACTTCCAAGCAAATA
EST: gi|7692445|gb|AW760551.1|AW760551
EST:     CAATGTTGCTGGGTTTATTTATGTAACCGACATTGACATTCAGAG                         AAAGAAGATAACATATCTTGCTCCGTCTGCTGGAGAACTTCCAAGCAAATA
genomic: CAATGTTGCTGGGTTTATTTATGTAACCGACATTGACATTCAGAGgtttgtatcg ... taaattacagAAAGAAGATAACATATCTTGCTCCGTCTGCTGGAGAACTTCCAAGCAAATA
EST: gi|213594931|gb|DB977245.1|DB977245
EST:     CAATGTTGCTGGGTTTATTTATGTAACCGACATTGACATTCAGAG                         AAAGAAGATAACATATCTTGCTCCGTCTGCTGGAGAACTTCCAAGCAAATA
genomic: CAATGTTGCTGGGTTTATTTATGTAACCGACATTGACATTCAGAGgtttgtatcg ... taaattacagAAAGAAGATAACATATCTTGCTCCGTCTGCTGGAGAACTTCCAAGCAAATA
EST: gi|58024955|gb|CX711696.1|CX711696
EST:     CAATGTTGCTGGGTTTATTTATGTAACCGACATTGACATTCAGAG                         AAAGAAGATAACATATCTTGCTCCGTCTGCTGGAGAACTTCCAAGCAAATA
genomic: CAATGTTGCTGGGTTTATTTATGTAACCGACATTGACATTCAGAGgtttgtatcg ... taaattacagAAAGAAGATAACATATCTTGCTCCGTCTGCTGGAGAACTTCCAAGCAAATA
EST: gi|31461602|gb|CD403630.1|CD403630
EST:     CAATGTTGCTGGGTTTATTTATGTAACCGACATTGACATTCAGAG                         AAAGAAGATAACATATCTTGCTCCGTCTGCTGGAGAACTTCCAAGCAAATA
genomic: CAATGTTGCTGGGTTTATTTATGTAACCGACATTGACATTCAGAGgtttgtatcg ... taaattacagAAAGAAGATAACATATCTTGCTCCGTCTGCTGGAGAACTTCCAAGCAAATA
EST: gi|298173901|gb|HO017237.1|HO017237
EST:     CAATGTTGCTGGGTTTATTTATGTAACCGACATTGACACTCAGAG                         AAAGAAGATAACATATCTTGCTCCGTCTGCTGGAGAACTTCCAAGCAAATA
genomic: CAATGTTGCTGGGTTTATTTATGTAACCGACATTGACATTCAGAGgtttgtatcg ... taaattacagAAAGAAGATAACATATCTTGCTCCGTCTGCTGGAGAACTTCCAAGCAAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattttactgtctgtgccgaatgtttacatttctaacttgaattgtaaattacagAAAGAAGATAACATATCTTGCTCCGTCTGCTGGAGAACTTCCAAGCAAATATTTGATAATGGGATCCTTAACATGGCTTGAAACATGAGCTAATGAACAG
                              ttctaac  putative branch site (score: 1)
                                     ttgaattgtaaatta  TA-rich tract