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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttaaattccttaaaaatttccacgtctcgtctatttattgtttgttattatccatcaatcaggtgaacattttctctcctttgcccacatcgattctgactatcattgtttatgttcagtttcgtagaattaaacatagttttttctgtaacagGGAGTTCATGACATATTTCAAGGTTCACCTGAAAGGTTGTGGGGGCCAGATGAACCAAGGGTAAACAAAATTGTATTCATAGGGAAAAACTTGGATGCTA

Basic information

species Glycine max
transcript GLYMA10G43740.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G43740.1 (Glycine max), 3'ss of exon 9
lower sequence: AT1G15730.1 (Arabidopsis thaliana), 3'ss of exon 9
gtaagtttaaattccttaaaaatttccacgtctcgtctatttattgtttgttattatccatcaatcaggtgaacattttctctcctttgcccacatcgattctgactatcattgtttatgttcagtttcgtagaattaaacatagttttttctgtaacagGGAGTTCATGACATATTTCAAGGTTCACCTGAAAGGTTGTGGGGGCCAGATGAACCAAGGGTAAACAAAATTGTATTCATAGGGAAAAACTTGGATGCTA
                                     |    |   ||||| |||||   |  ||||  |    ||    |||       | |   |  ||  ||     ||| | | ||   |  || || |  || |  || |||      | |||||||||||||||| |||||| |||| ||||||||  |||| ||| |   ||||||| ||||    ||||| ||||| ||||| || || || ||| |     
------------------------------------gtgaccaacctttgtcattatt--ttgatcatttcgg-atgaattctaaagcatcgaagcc--ttgggatgtaaattatctctg---acgtttgtgg--tttataatggtt------ggaacagGGAGTTCATGAAATATTTGAAGGATCACCTGACCGGTTATGGAGAAAAGATGAAACAAGAACCAACAAGATTGTTTTCATCGGCAAGAATTTGAACCGGG

upper sequence: GLYMA10G43740.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv09s0002g08260.t01 (Vitis vinifera), 3'ss of exon 9
gtaagtttaaattccttaaaaatttccacgtctcgtctatttattgtttgttattatccatcaatcaggtgaacattttctctcctttgcccacatcgattctgactatcattgtttatgttcagtttcgtagaattaaacatagttttttctgtaacagGGAGTTCATGACATATTTCAAGGTTCACCTGAAAGGTTGTGGGGGCCAGATGAACCAAGGGTAAACAAAATTGTATTCATAGGGAAAAACTTGGATGCTA
                                              ||||  ||||    |    | | |  | ||||| |                  || |||  |   || ||    |||  |||| |    | | |  |   || |||| ||||||||||||||||| ||||| ||||||||||||||  |||| ||||| |||||||||||||| |||||||| || || ||||||||||| ||||| ||||  |
-------------------------------------------ccttttgaaattacatgttgcactgattgatattttattca-------------agttttgaacaattttattctctttctttttctt----taacatgtgaattattctataacagGGAGTTCATGATATATTCCAAGGTTCACCTGATCGGTTATGGGGCCCAGATGAACCAAGAGTAAACAAGATCGTGTTCATAGGGAAGAACTTAGATGGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8669178|gb|BE190285.1|BE190285
EST:     TGAAGGGCCTTCTGTCTGTTCAAGGAATGAACGAGAGATTTGTCTTTCAG                         GGAGTTCATGACATATTTCAAGGTTCACCTGAAAGGTTGTGGGGGCCAGAT
genomic: TGAAGGGCCTTCTGTCTGTTCAAGGAATGAACGAGAGATTTGTCTTTCAGgtaagtttaa ... tctgtaacagGGAGTTCATGACATATTTCAAGGTTCACCTGAAAGGTTGTGGGGGCCAGAT
EST: gi|213614752|gb|DB980618.1|DB980618
EST:     TGAAGGGCCTTCTGTCTGTTCAAGGAATGAACGAGAGATTTGTCTTTCAG                         GGAGTTCATGACATATTTCAAGGTTCACCTGAAAGGTTGTGGGGGCCAGAT
genomic: TGAAGGGCCTTCTGTCTGTTCAAGGAATGAACGAGAGATTTGTCTTTCAGgtaagtttaa ... tctgtaacagGGAGTTCATGACATATTTCAAGGTTCACCTGAAAGGTTGTGGGGGCCAGAT
EST: gi|8669187|gb|BE190294.1|BE190294
EST:     TGAAGGGCCTTCTGTCTGTTCAAGGAATGAACGAGAGATTTGTCTGTCAG                         GGAGTTCATGACATATTTCAAGGTTCACCTGAAAGGTTGTGGGGGCCAGAT
genomic: TGAAGGGCCTTCTGTCTGTTCAAGGAATGAACGAGAGATTTGTCTTTCAGgtaagtttaa ... tctgtaacagGGAGTTCATGACATATTTCAAGGTTCACCTGAAAGGTTGTGGGGGCCAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatcattgtttatgttcagtttcgtagaattaaacatagttttttctgtaacagGGAGTTCATGACATATTTCAAGGTTCACCTGAAAGGTTGTGGGGGCCAGATGAACCAAGGGTAAACAAAATTGTATTCATAGGGAAAAACTTGGATGCTA
                                        ttttttctgt  CT-rich tract
                         tagaattaaacatagt  TA-rich tract