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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaactacatgttccttcactcattcattagttagctgattactagttatctacagtgtatttttttatgatttttaaaaaatgaattatacaataatttgtctgacctttttatattaatttagTGGGGAAGATGCATATAAGAAAATACGAGCTGGAGCAACTCTAGTTCAGCTCTATACCGCATTCGCTTATGGGGGACCTGCACTTATTCCTCAGATAAAG

Basic information

species Glycine max
transcript GLYMA10G43220.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G43220.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv10s0042g00140.t01 (Vitis vinifera), 3'ss of exon 9
gtaaaactacatgttccttcactcattcattagttagctgattactagttatctacagtgtatttttttatgatttttaaaaaatgaattatacaataa-tttgtctgacctttttatattaatttagTGGGGAAGATGCATATAAGAAAATACGAGCTGGAGCAACTCTAGTTCAGCTCTATACCGCATTCGCTTATGGGGGACCTGCACTTATTCCTCAGATAAAG
|||||| ||   |  |   |      |||| |   |||||      |  | | || | | ||| | || |   ||| | ||   |   || |     || ||||| |||  | |||       || ||||| |||||||||||||| ||||||||||| ||||||||||| |||||||| |||||    || ||||||| ||| ||||| ||||||||||| ||||||
gtaaaa-tatcggcacaaccttgtcatcatga--cagctgtgggtcatatgtgtata-tatatatattcaccttttctgaagtcttttttttttttgaactttgtttgatatgttt-----ggttcagTGGTGAAGATGCATATAAAAAAATACGAGCAGGAGCAACTCTTGTTCAGCTTTATACACAGTTTGCTTATGAGGGTCCTGCCCTTATTCCTCAAATAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8283370|gb|BE020931.1|BE020931
EST:     GGCAGGATTCCTTTGATTGGCTGTGGGGGCATTTACCAG                         TGGGGAAGATGCATATAAGAAA
genomic: GGCAGGATTCCTTTGATTGGCTGTGGGGGCATT-AGCAGgtaaaactac ... attaatttagTGGGGAAGATGCATATAAGAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttttaaaaaatgaattatacaataatttgtctgacctttttatattaatttagTGGGGAAGATGCATATAAGAAAATACGAGCTGGAGCAACTCTAGTTCAGCTCTATACCGCATTCGCTTATGGGGGACCTGCACTTATTCCTCAGATAAAG
                                            tattaat  putative branch site (score: 2)
     taaaaaatgaattata  TA-rich tract