1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttttcttctttgccttagtttatcatggtgtcctatattatcttcttcagggttccctgatttttgttcttgctactgcagCCTATGCTACAAGAGCTTGGCAAACAAAATCCCCATCTAATGAGATTGATTCGAGACCATCAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAG
species | Glycine max |
transcript | GLYMA10G42180.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAG CCTATGCTACAAGAGCTTGGCAAACATTATCCCCATCTAATGAGATTGATTEST: gi|10709284|gb|BF009008.1|BF009008
genomic: TTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAGgttttcttct ... gctactgcagCCTATGCTACAAGAGCTTGGCAAACAAAATCCCCATCTAATGAGATTGATT
EST: TTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAG CCTATGCTACAAGAGCTTGGCAAACAAAATCCCCATCTAATGAGATTGATTEST: gi|12690109|gb|BG156445.1|BG156445
genomic: TTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAGgttttcttct ... gctactgcagCCTATGCTACAAGAGCTTGGCAAACAAAATCCCCATCTAATGAGATTGATT
EST: TTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAG CCTATGCTACAAGAGCTTGGCAAACAAAATCCCCATCTAATGAGATTGATTEST: gi|151401292|gb|EV271106.1|EV271106
genomic: TTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAGgttttcttct ... gctactgcagCCTATGCTACAAGAGCTTGGCAAACAAAATCCCCATCTAATGAGATTGATT
EST: TTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAG CCTATGCTACAAGAGCTTGGCAAACAAAATCCCCATCTAATGAGATTGATTEST: gi|24205755|gb|BU965008.1|BU965008
genomic: TTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAGgttttcttct ... gctactgcagCCTATGCTACAAGAGCTTGGCAAACAAAATCCCCATCTAATGAGATTGATT
EST: TTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAG CCTATGCTACAAGAGCTTGGCAAACAAAATCCCCATCTAATGAGATTGATTEST: gi|15663984|gb|BI701355.1|BI701355
genomic: TTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAGgttttcttct ... gctactgcagCCTATGCTACAAGAGCTTGGCAAACAAAATCCCCATCTAATGAGATTGATT
EST: TTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAG CCTATGCTACAAGAGCTTGGCAAACAAAATCCCCATCTAATGAGATTGATT
genomic: TTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAGgttttcttct ... gctactgcagCCTATGCTACAAGAGCTTGGCAAACAAAATCCCCATCTAATGAGATTGATT
ggtgtcctatattatcttcttcagggttccctgatttttgttcttgctactgcagCCTATGCTACAAGAGCTTGGCAAACAAAATCCCCATCTAATGAGATTGATTCGAGACCATCAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAG
ccctgat putative branch site (score: 4)
tttttgttcttgct CT-rich tract
tatattatcttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttcttctttgccttagtttatcatggtgtcctatattatcttcttcagggttccctgatttttgttcttgctactgcagCCTATGCTACAAGAGCTTGGCAAACAAAATCCCCATCTAATGAGATTGATTCGAGACCATCAAGCTGACTTCCTTCGCCTGATAAATGAACCTGCAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG