1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tatttactggactcttttagtactgtaatagttgctagagtttcttattggctatactgcaactcaacatataccctaatcatgcagttgtggtttacagGCACCGGTGAAATTAGTTGTAGTCTTCTTGCGAGACAGGAGGGGCACAAGCGGATTATCTGGTCATGTTCTTGGAATCCGCATGGTCAGGAATTTGCAAC
species | Glycine max |
transcript | GLYMA10G41620.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GACTGTCTCAAGGGATCGCCAGTTCTCTGTCTTTTCTATCACAAGAACAG GCACCGGTGAAATTAGTTGTAGTCTTCTTGCGAGACAGGAGGGGCACAAGCEST: gi|58015737|gb|CX702479.1|CX702479
genomic: GACTGTCTCAAGGGATCGCCAGTTCTCTGTCTTTTCTATCACAAGAACAGgtatatatgt ... tggtttacagGCACCGGTGAAATTAGTTGTAGTCTTCTTGCGAGACAGGAGGGGCACAAGC
EST: TCACAAGAACAG GCACCGGTGAAATTAGTTGTAGTCTTCTTGCGAGACAGGAGGGGCACAAGCEST: gi|208284813|gb|GE085627.1|GE085627
genomic: TCACAAGAACAGgtatatatgt ... tggtttacagGCACCGGTGAAATTAGTTGTAGTCTTCTTGCGAGACAGGAGGGGCACAAGC
EST: CTTGTTCTCAAGGGATCGCCAGTTCTCTGTCTTTTCTATCACAAGAACAG GCACCGGTGAAATTAGTTGTAGTCTTCTTGCGAGACAGGAGGGGCACAAGCEST: gi|208188298|gb|GD982772.1|GD982772
genomic: C-TG-TCTCAAGGGATCGCCAGTTCTCTGTCTTTTCTATCACAAGAACAGgtatatatgt ... tggtttacagGCACCGGTGAAATTAGTTGTAGTCTTCTTGCGAGACAGGAGGGGCACAAGC
EST: GACTGTCTCAAGGGATCGCCAGTTCTCTGTCTTTTCTATCACAAGAACAG GCACCGGTGAAATTAGTTGTAGTCTTCTTGCGAGACAGGAGGGGCACAAGCEST: gi|58015522|gb|CX702264.1|CX702264
genomic: GACTGTCTCAAGGGATCGCCAGTTCTCTGTCTTTTCTATCACAAGAACAGgtatatatgt ... tggtttacagGCACCGGTGAAATTAGTTGTAGTCTTCTTGCGAGACAGGAGGGGCACAAGC
EST: TCACAAGAACAG GCACCGGTGAAATTAGTTGTAGTCTTCTTGCGAGACAGGAGGGGCACAAGCEST: gi|207789177|gb|GD762205.1|GD762205
genomic: TCACAAGAACAGgtatatatgt ... tggtttacagGCACCGGTGAAATTAGTTGTAGTCTTCTTGCGAGACAGGAGGGGCACAAGC
EST: GACTGTCTCAAGGGATCGCCAGTTCTCTGTCTTTTCTATCACAAGAACAG GCACCGGTGAAATTAGTTGTAGTCTTCTTGCGAGACAGGAGGGGGCACAAGEST: gi|208310406|gb|GE105570.1|GE105570
genomic: GACTGTCTCAAGGGATCGCCAGTTCTCTGTCTTTTCTATCACAAGAACAGgtatatatgt ... tggtttacagGCACCGGTGAAATTAGTTGTAGTCTTCTTGCGAGACAGGAGGGG-CACAAG
EST: GACTGTCTCAAGGGATCGCCAGTTCTCTGTCTTTTCTATCACAAGAACAG GCACCGGTGAAATTAGTTGTAGTCTTCTTGCGAGACAGGAGGGGCACAAGCEST: gi|19269252|gb|BM885508.1|BM885508
genomic: GACTGTCTCAAGGGATCGCCAGTTCTCTGTCTTTTCTATCACAAGAACAGgtatatatgt ... tggtttacagGCACCGGTGAAATTAGTTGTAGTCTTCTTGCGAGACAGGAGGGGCACAAGC
EST: CACAAGAACAG GCACCGGTGAAATTAGTTGTAGTCTTCTTGCGAGACAGGAGGGGCACAAGC
genomic: CACAAGAACAGgtatatatgt ... tggtttacagGCACCGGTGAAATTAGTTGTAGTCTTCTTGCGAGACAGGAGGGGCACAAGC
tattggctatactgcaactcaacatataccctaatcatgcagttgtggtttacagGCACCGGTGAAATTAGTTGTAGTCTTCTTGCGAGACAGGAGGGGCACAAGCGGATTATCTGGTCATGTTCTTGGAATCCGCATGGTCAGGAATTTGCAAC
ccctaat putative branch site (score: 3)
aacatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttactggactcttttagtactgtaatagttgctagagtttcttattggctatactgcaactcaacatataccctaatcatgcagttgtggtttacagGCACCGGTGAAATTAGTTGTAGTCTTCTTGCGAGACAGGAGGGGCACAAGCGGATTATCTGGTCATGTTCTTGGAATCCGCATGGTCAGGAATTTGCAAC
- -ttactgg
- - - - - - - - - - - - - - - gttgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - tactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgca