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gtaagcacagttctgatttatgagtgagcaaggagttaacttcaactatatagcatgtactaggaaacagaactttattgatatacttgcagagtttaattatggtttcccttgctctaatactaatgaataccaaattgatttatgcacactttcagGGCTTTTCAGGGACTTTCTATCAATGAATTTAGTGGTCTTCAATTTGACCATCAGCATTCATTTGATATTCAAACTGGAGAACAG
species | Glycine max |
transcript | GLYMA10G41110.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AATACCCCAATCATCTTCCGTTGGATTCCTAATGTTTCTCTGATTAGATG GGCTTTTCAGGGACTTTCTATCAATGAATTTAGTGGTCTTCAATTTGACCAEST: gi|14259801|gb|BG882709.1|BG882709
genomic: AATACCCCAATCATCTTCCGTTGGATTCCTAATGTTTCTCTGATTAGATGgtaagcacag ... acactttcagGGCTTTTCAGGGACTTTCTATCAATGAATTTAGTGGTCTTCAATTTGACCA
EST: AATACCCCAATCATCTTCCGTTGGATTCCTAATGTTTCTCTGATTAGATG GGCTTTTCAGGGACTTTCTATCAATGAATTTAGTGGTCTTCAATTTGACCAEST: gi|15285802|gb|BI469693.1|BI469693
genomic: AATACCCCAATCATCTTCCGTTGGATTCCTAATGTTTCTCTGATTAGATGgtaagcacag ... acactttcagGGCTTTTCAGGGACTTTCTATCAATGAATTTAGTGGTCTTCAATTTGACCA
EST: AATACCCCAATCATCTTCCGTTGGATTCCTAATGTTTCTCTGATTAGATG GGCTTTTCAGGGACTTTCTATCAATGAATTTAGTGGTCTTCAATTTGACCAEST: gi|9899476|gb|BE608444.1|BE608444
genomic: AATACCCCAATCATCTTCCGTTGGATTCCTAATGTTTCTCTGATTAGATGgtaagcacag ... acactttcagGGCTTTTCAGGGACTTTCTATCAATGAATTTAGTGGTCTTCAATTTGACCA
EST: AATACCCCAATCATCTTCCGTTGGATTCCTAATGTTTCTCTGATTAGATG GGCTTTTCAGGGACTTTCTATCAATGAATTTAGTGGTCTTCAATTTGACCAEST: gi|6070484|gb|AW099871.1|AW099871
genomic: AATACCCCAATCATCTTCCGTTGGATTCCTAATGTTTCTCTGATTAGATGgtaagcacag ... acactttcagGGCTTTTCAGGGACTTTCTATCAATGAATTTAGTGGTCTTCAATTTGACCA
EST: AATACCCCAATCATCTTCCGTTGGATTCCTAATGTTTCTCTGATTAGATG GGCTTTTCAGGGACTTTCTATCAATGAATTTAGTGGTCTTCAATTTGACCA
genomic: AATACCCCAATCATCTTCCGTTGGATTCCTAATGTTTCTCTGATTAGATGgtaagcacag ... acactttcagGGCTTTTCAGGGACTTTCTATCAATGAATTTAGTGGTCTTCAATTTGACCA
ggtttcccttgctctaatactaatgaataccaaattgatttatgcacactttcagGGCTTTTCAGGGACTTTCTATCAATGAATTTAGTGGTCTTCAATTTGACCATCAGCATTCATTTGATATTCAAACTGGAGAACAG
cactttc CT-rich tract
taatactaatgaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcacagttctgatttatgagtgagcaaggagttaacttcaactatatagcatgtactaggaaacagaactttattgatatacttgcagagtttaattatggtttcccttgctctaatactaatgaataccaaattgatttatgcacactttcagGGCTTTTCAGGGACTTTCTATCAATGAATTTAGTGGTCTTCAATTTGACCATCAGCATTCATTTGATATTCAAACTGGAGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA