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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagttgtcttttggcaatatattttgctgtgaaaatccaaggattgtgctaaatgctaatgtggtatgtgaatggacagATATTGACTGGTGTTCCATGGTACAAAGAACGCCTTCTCCATCAGACTTCTCTTGGTTCCCTCATGGTCGTAATTCTTATCAGAACTGTACAGTATAATT

Basic information

species Glycine max
transcript GLYMA10G38920.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G38920.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv05s0020g04100.t01 (Vitis vinifera), 3'ss of exon 9
gtaagagttgtcttttggcaatatattttgctgtgaaaatccaaggattgtgctaaatgctaatgtggtatgtgaatggacagATATTGACTGGTGTTCCATGGTACAAAGAACGCCTTCTCCATCAGACTTCTCTTGGTTCCCTCATGGTCGTAATTCTTATCAGAACTGTACAGTATAATT
|||||  | | || | |      |  |    |     | | ||     | ||    ||  | ||||  ||| |   | |||||||| |  || ||||||||||||||||||||||||| || || ||||| ||||||||||| || |||||| ||||||| || || |||||  | |||||  
gtaaggatggactct-gtaggcctgctgcattcc---agttcagtatgtatgaaccatattgatgtattatttattttgacagATACTTCCTAGTGTTCCATGGTACAAAGAACGCCTCCTTCACCAGACCTCTCTTGGTTCTCTGATGGTCATAATTCTCATTAGGACTGTGAAATATAACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393515|gb|EV263390.1|EV263390
EST:     TTCTCATACTCAGTCAAGATTCTTCCTTTAATGCAAGCATTCATAAGCTG                         ATATTGACTGGTGTTCCATGGTACAAAGAACGCCTTCTCCATCAGACTTCT
genomic: TTCTCATACTCAGTCAAGATTCTTCTTTTAATGCAAGCATTCATAAGCTGgtaagagttg ... gaatggacagATATTGACTGGTGTTCCATGGTACAAAGAACGCCTTCTCCATCAGACTTCT
EST: gi|9898564|gb|BE607532.1|BE607532
EST:     CAAGATTCTTCTTTTAATGCAAGCATTCATAAGCTG                         ATATTGACTGGTGTTCCATGGTACAAAGAACGCCTTCTCCATCAGACTTCT
genomic: CAAGATTCTTCTTTTAATGCAAGCATTCATAAGCTGgtaagagttg ... gaatggacagATATTGACTGGTGTTCCATGGTACAAAGAACGCCTTCTCCATCAGACTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctgtgaaaatccaaggattgtgctaaatgctaatgtggtatgtgaatggacagATATTGACTGGTGTTCCATGGTACAAAGAACGCCTTCTCCATCAGACTTCTCTTGGTTCCCTCATGGTCGTAATTCTTATCAGAACTGTACAGTATAATT
                             tgctaat  putative branch site (score: 2)
     tgaaaat  TA-rich tract