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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctaatattttctttaaaccttttttttatatatattttgattgcatcttagatctgtgattcagtatcattgctttctgatgattcagGTTATAAAGAACTCTAATGGATGCAACCTTGCAGTGGATATATGGAGTCTTGGATGCACGGTTTTGGAAATGGCTACTACCAAACCTCCTTGGTTTCAGT

Basic information

species Glycine max
transcript GLYMA10G37730.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G37730.1 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os02g44642.1 (Oryza sativa), 3'ss of exon 8
----------------gttctaatat-tttctttaaaccttttttttatatatattt-tgattgcatcttagatctgtgattcagtatcattgctttc----------tgatgattcagGTTATAAAGAACTCTAATGGATGCAACCTTGCAGTGGATATATGGAGTCTTGGATGCACGGTTTTGGAAATGGCTACTACCAAACCTCCTTGGTTTCAGT
                 ||||  ||   |||| ||    |||  |  || |||   | |  |  |  |   | | |   | |||   |   | || ||          | |  || ||||||||||| || ||||||||||| || ||||| || || ||||||||  | |||||||||||||| || ||||||||  | ||||| || |||   || |
gtaatgaaaatcctacattcttctacacttctctagttatttgatgaatttatgcctatcttctctccgctGTTATAAAAATCAACCTTGCTTCTCTCACACATGTAATAACTATGCAGGTTATAAAAAATTCTAATGGATGTAATCTTGCTGTTGACATATGGAGCTTAGGATGCACGGTTTTAGAGATGGCTACCTCAAAACCACCATGGAGCCAAT

upper sequence: GLYMA10G37730.1 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os04g47240.3 (Oryza sativa), 3'ss of exon 8
------gttctaatattttctt--taaaccttttttttatatatattttgattgcatcttagatctgtgattcagtat-cattgctttctgatgattcagGTTATAAAGAACTCTAATGGATGCAACCTTGCAGTGGATATATGGAGTCTTGGATGCACGGTTTTGGAAATGGCTACTACCAAACCTCCTTGGTTTCAGT
       |   ||| ||| |||  |||   ||| ||| ||  |||| || |||||   ||   |   | |   | ||| ||   | |       |  ||||||||||| ||||| ||||| |||||||| || || || ||||||||| | |||||||| ||  |||| ||||||||  | ||||| || |||   ||||
gtatcactgaaaatctttacttgttaattttttgtttcatgcatatctt-attgccatttctgtacatcacatactatgcaacacat-------acgcagGTTATAAAAAACTCAAATGGGTGCAACCTAGCTGTTGACATATGGAGTTTGGGATGCACTGTCCTGGAGATGGCTACATCGAAACCGCCATGGAGCCAGT

upper sequence: GLYMA10G37730.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G175504_T01 (Zea mays), 3'ss of exon 7
-------------gttctaatattttctttaaaccttttttttatatatattttgattgcatcttagat-ctgt-gattcagtatcattgctttctgatgatt-cagGTTATAAAGAACTCTAATGGATGCAACCTTGCAGTGGATATATGGAGTCTTGGATGCACGGTTTTGGAAATGGCTACTACCAAACCTCCTTGGTTTCAGT
             | |||    ||   ||  |   |||||||||  |  || |  ||  |||  ||  | ||||  |   | ||  |    |     |  | | ||||||||||| || |||||||||||||||||||  || || ||||||||| | || ||||| ||  |||||||||||||  | || || || |||   ||||
gtactgaaatgaagctcttcctttagtttgtatttttttttttaattcaatgtgcatcacattataatttctgttaacaaaatactaaccatgcagcacaaatgcagGTTATAAAAAATTCTAATGGATGCAACCTTGTGGTTGACATATGGAGTTTAGGTTGCACTGTCCTGGAAATGGCTACCTCAAAGCCACCATGGAGCCAGT

upper sequence: GLYMA10G37730.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G093316_T01 (Zea mays), 3'ss of exon 8
gttctaatattttctttaaaccttttttttatatatattttgattgcatc--ttagatctgtgattcagtatcattgctt----tctgatga---ttcagGTTATAAAGAACTCTAATGGATGCAACCTTGCAGTGGATATATGGAGTCTTGGATGCACGGTTTTGGAAATGGCTACTACCAAACCTCCTTGGTTTCAGT
       ||||  |   || | |   || |     || |||  ||   |     |||| | |   ||   | | ||||||    | |||  |   | ||||||||||| ||  ||| |||||| ||||||||||| |||||||||||| | |||||||| ||  | || ||||||||| | ||||| || |||   || |
------gtattaccccaaatcttgcattgttctgctactttagttattttggccagatttatatatcctgacctttgcttatgttgtgacaaatatgcagGTTATAAAAAATGCTAGTGGATGTAACCTTGCAGTTGATATATGGAGTTTAGGATGCACAGTCCTAGAGATGGCTACTTCAAAACCACCATGGAGCCAAT

upper sequence: GLYMA10G37730.1 (Glycine max), 3'ss of exon 9
lower sequence: AC209208.3_FGT001 (Zea mays), 3'ss of exon 7
-----gttctaatattttctttaaaccttttttttatatatattttgattgcatct-tagatctgtgattcagtatcattgctttctgatga---ttcagGTTATAAAGAACTCTAATGGATGCAACCTTGCAGTGGATATATGGAGTCTTGGATGCACGGTTTTGGAAATGGCTACTACCAAACCTCCTTGGTTTCAGT
     |  | ||   || | ||   ||  |   |||  |||  |||| |||  | | || |||| ||| |   | || |||  || |||  |   | ||||||||||| ||  |||  ||||| ||||||||||| |||||||||||| | |||||||| ||  | || ||||||||| | ||||| || |||   || |
gtattgccccaaatcttgcattgtcccgctacattagttat--tttggttgggtttatatatct-tgactttttttc-ttgtgttgtgacaaatatgcagGTTATAAAAAATGCTAGCGGATGTAACCTTGCAGTTGATATATGGAGTTTAGGATGCACAGTCCTAGAGATGGCTACTTCAAAACCACCATGGAGCCAAT

upper sequence: GLYMA10G37730.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv16s0050g00770.t01 (Vitis vinifera), 3'ss of exon 7
gttctaatattttctttaaaccttttttt-tatatatattt-tgattgcatcttagatctgtgattcagtatcattgctttctgatgattcagGTTATAAAGAACTCTAATGGATGCAACCTTGCAGTGGATATATGGAGTCTTGGATGCACGGTTTTGGAAATGGCTACTACCAAACCTCCTTGGTTTCAGT
||   ||| |||| | |   | |    || | | |  |||| |||     | ||     | |   | | |    |       || |   ||||||||||| ||| || ||||| ||||||||||| |||||||| |||||||| || ||||| |||||||||||||| || || ||||| || |||  |||||
gtcagaatgttttttcttgccataaccttatctcttcatttatgacaagcttttgatagtatttcttacttctctgttcagttgttcgctcagGTTATAAGGAATTCAAATGGTTGCAACCTTGCTGTGGATATTTGGAGTCTAGGGTGCACAGTTTTGGAAATGGCCACAACAAAACCACCCTGGAGTCAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgattgcatcttagatctgtgattcagtatcattgctttctgatgattcagGTTATAAAGAACTCTAATGGATGCAACCTTGCAGTGGATATATGGAGTCTTGGATGCACGGTTTTGGAAATGGCTACTACCAAACCTCCTTGGTTTCAGT
                                         ttctgat  putative branch site (score: 3)
                                       ctttctg  CT-rich tract
                               tatcatt  TA-rich tract