1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gctattgttttgattcttttttaccacaatggaccctatcttgtttgatcaacgttttggatatgtaaatcattattcttattttctttgctcataccagCTTCCACCTGATGTGGAGTCTGTTTTGCTGCAACAAGTATTGAATCTGACACCAGAACAATTGAGTTCCTTGCCACCAGATCAGCAACAACAGGTCATTC
species | Glycine max |
transcript | GLYMA10G36350.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATGCAGCTCCTAAAGCGGAAGGGCAATACTCTGAGCAACAATTTTCTCAG CTTCCACCTGATGTGGAGTCTGTTTTGCTGCAACAAGTATTGAATCTGACA
genomic: ATGCAGCTCCTAAAGCGGAAGGGCAATACTCTGAGCAACAATTTTCTCAGgtatgtgtga ... ctcataccagCTTCCACCTGATGTGGAGTCTGTTTTGCTGCAACAAGTATTGAATCTGACA
tgatcaacgttttggatatgtaaatcattattcttattttctttgctcataccagCTTCCACCTGATGTGGAGTCTGTTTTGCTGCAACAAGTATTGAATCTGACACCAGAACAATTGAGTTCCTTGCCACCAGATCAGCAACAACAGGTCATTC
gtttgat putative branch site (score: 5)
ttattcttattttctt putative PPT
atatgtaaatcattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctattgttttgattcttttttaccacaatggaccctatcttgtttgatcaacgttttggatatgtaaatcattattcttattttctttgctcataccagCTTCCACCTGATGTGGAGTCTGTTTTGCTGCAACAAGTATTGAATCTGACACCAGAACAATTGAGTTCCTTGCCACCAGATCAGCAACAACAGGTCATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
gctattg
- - - - - - - - - - - accacaa
- - - - - - - - - - - - - - - - -ccctatc
- - - - - - - - - - - - - - - - - - - - ttgtttg