1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...agaaaattttacttgtattattggcccacccatactggttatattctcaatcattaaatgtttattattgtcttataattttgtaattgctttattttagAGCGTCCTCCATATCAAGAACCCCTGGATTGGCCAACCCGGAAAAGAGTAGCTTTGGGATCTGCAAGGGGTCTTTCATATTTGCATGATCATTGTGACCC
species | Glycine max |
transcript | GLYMA10G36280.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACTTGTTTATCCCTACATGGCTAATGGAAGTGTTGCTTCTTGCTTAAGAG AGCGTCCTCCATATCAAGAACCCCTGGATTGGCCAACCCGGAAAAGAGTAGEST: gi|18690739|gb|BM519587.1|BM519587
genomic: ACTTGTTTATCCCTACATGGCTAATGGAAGTGTTGCTTCTTGCTTAAGAGgtagatcttc ... tttattttagAGCGTCCTCCATATCAAGAACCCCTGGATTGGCCAACCCGGAAAAGAGTAG
EST: ACTTGTTTATCCCTACATGGCTAATGGAAGTGTTGCTTCTTGCTTAAGAG AGCGTCCTCCATATCAAGAACCCCTGGATTGGCCAACCCGGAAAAGAGTAGEST: gi|15814274|gb|BI786549.1|BI786549
genomic: ACTTGTTTATCCCTACATGGCTAATGGAAGTGTTGCTTCTTGCTTAAGAGgtagatcttc ... tttattttagAGCGTCCTCCATATCAAGAACCCCTGGATTGGCCAACCCGGAAAAGAGTAG
EST: ACTTGTTTATCCCTACATGGCTAATGGAAGTGTTGCTTCTTGCTTAAGAG AGCGTCCTCCATATCAAGAACCCCTGGATTGGCCAACCCGGAAAAGAGTAGEST: gi|7692956|gb|AW761055.1|AW761055
genomic: ACTTGTTTATCCCTACATGGCTAATGGAAGTGTTGCTTCTTGCTTAAGAGgtagatcttc ... tttattttagAGCGTCCTCCATATCAAGAACCCCTGGATTGGCCAACCCGGAAAAGAGTAG
EST: ACTTGTTTATCCCTACATGGCTAATGGAAGTGTTGCTTCTTGCTTAAGAG AGCGTCCTCCATATCAAGAACCCCTGGATTGGCCAACCCGGAAAAGAGTAGEST: gi|15662450|gb|BI699821.1|BI699821
genomic: ACTTGTTTATCCCTACATGGCTAATGGAAGTGTTGCTTCTTGCTTAAGAGgtagatcttc ... tttattttagAGCGTCCTCCATATCAAGAACCCCTGGATTGGCCAACCCGGAAAAGAGTAG
EST: ACTTGTTTATCCCTACATGGCTAATGGAAGTGTTGCTTCTTGCTTAAGAG AGCGTCCTCCATATCAAGAACCCCTGGATTGGCCAACCCGGAAAAGAGTAG
genomic: ACTTGTTTATCCCTACATGGCTAATGGAAGTGTTGCTTCTTGCTTAAGAGgtagatcttc ... tttattttagAGCGTCCTCCATATCAAGAACCCCTGGATTGGCCAACCCGGAAAAGAGTAG
ctcaatcattaaatgtttattattgtcttataattttgtaattgctttattttagAGCGTCCTCCATATCAAGAACCCCTGGATTGGCCAACCCGGAAAAGAGTAGCTTTGGGATCTGCAAGGGGTCTTTCATATTTGCATGATCATTGTGACCC
ctttatttt CT-rich tract
tttattattgtcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaaaattttacttgtattattggcccacccatactggttatattctcaatcattaaatgtttattattgtcttataattttgtaattgctttattttagAGCGTCCTCCATATCAAGAACCCCTGGATTGGCCAACCCGGAAAAGAGTAGCTTTGGGATCTGCAAGGGGTCTTTCATATTTGCATGATCATTGTGACCC
- - - - - - - - - - - - cccaccc
- - - - - - - - - - - - - - - - -actggtt