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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaacaattaaatgcattactttctcatttcagaaaatctttgcactgcgacatagttgcactatgtatattaacagcaaatataattttttcttttacagGTCTGGTGATGTCATTGATTGGATCATTACTCACAATGCTTGTT

Basic information

species Glycine max
transcript GLYMA10G35280.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G35280.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv13s0019g04660.t01 (Vitis vinifera), 3'ss of exon 11
---gaacaattaaatgcattactttctcatttcagaaaatctttgcactgcgacatagttgcactatg-tatattaacagcaaatataattttttctt-ttacagGTCTGGTGATGTCATTGATTGGATCATTACTCACAATGCTTGTT
   | || |||   | ||| ||  ||  |||    ||    ||     |  |       |  | |    ||| | | ||     |||  |||| |||  || ||||| |||||||| ||||||||||||| || |||||||||||||| 
tccgtaccatttc-ttcataaccctcggattatttaagcctttgatcttttgctgctcctttattccactatgtcatcat----tatccttttatctggttgcagGTTTGGTGATGGCATTGATTGGATCTTTGCTCACAATGCTTGTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcgacatagttgcactatgtatattaacagcaaatataattttttcttttacagGTCTGGTGATGTCATTGATTGGATCATTACTCACAATGCTTGTT
                      tattaac  putative branch site (score: 1)
                                        ttttttcttttac  putative PPT
                tatgtatattaacagc  TA-rich tract