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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcaggtttctgtgtttgattcagttgtccaaggaggtgactcagtttgggagGGTCTTCGAGTGTATAATGGAAAGATATTTAAGCTTGAGGAACATCTAGACAG

Basic information

species Glycine max
transcript GLYMA10G29770.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G29770.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G108416_T01 (Zea mays), 3'ss of exon 8
------------------------------------------------------------------------------------gtatcaggtttctgtgtttgattcagttgtccaaggaggtgactcagtttgggagGGTCTTCGAGTGTATAATGGAAAGATATTTAAGCTTGAGGAACATCTAGACAG
                                                                                    |||  ||||||| ||||||||||||||||| |||||||| ||  | |||||||| ||| | ||  | ||| |||||||  |||| ||  | || |||||| | |||| 
gtatatgtcactggtaccttgtggcatgccaccattattagaacatagtaaactctctacattctttctctaataatctttcttgtaa-agGTTTCAGTGTTTGATTCAGTTGTACAAGGAGGAGATGCTGTTTGGGAAGGTTTACGTATATATGATGGAAAAGTATTCAAATTAGATGAACATTTGGACA-

upper sequence: GLYMA10G29770.1 (Glycine max), 3'ss of exon 9
lower sequence: AT5G27410.2 (Arabidopsis thaliana), 3'ss of exon 18
------------------------------------------------------------------------------gtatcaggtttctgtgtttgattcagttgtccaaggaggtgactcagtttgggagGGTCTTCGAGTGTATAATGGAAAGATATTTAAGCTTGAGGAACATCTAGACAG
                                                                              |  | |||||||||| ||||| || || || ||||| |||||||| || ||||| ||||||||  | || || || ||  ||||||||||||| ||||||||||||  
gtgcttgagccatacatggatctctgtttgttatttcttgtttatgcttatgttctgatgttatttgtctttattcttgcttaagGTTTCTGTTTTTGACTCGGTCGTGCAAGGCGGTGACTCTGTATGGGAAGGTCTTCGTATATACAAAGGGAAAGTATTTAAGCTTGAAGAACATCTAGACC-

upper sequence: GLYMA10G29770.1 (Glycine max), 3'ss of exon 9
lower sequence: AT3G05190.1 (Arabidopsis thaliana), 3'ss of exon 8
-----------------------------------------------------------------------------------------gtatcaggtttctgtgtttgattcagttgtccaaggaggtgactcagtttgggagGGTCTTCGAGTGTATAATGGAAAGATATTTAAGCTTGAGGAACATCTAGACAG
                                                                                          | | |||||||||| ||||| || ||||| ||||| |||||||| || ||||| || |||||  | || || ||||||||||| ||||||||||||||||||||   
gtgtgcttgaaatgtggaagaaaacttaacagctcactgtttgttgatttgcattttgaacactgattatgttctatttcttcttatttttgtaagGTTTCTGTTTTTGACTCGGTTGTTCAAGGCGGTGACTCTGTATGGGAAGGACTTCGGATTTACAAGGGAAAGATATTCAAGCTTGAGGAACATCTAGATC-

upper sequence: GLYMA10G29770.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv14s0128g00100.t01 (Vitis vinifera), 3'ss of exon 18
-----------------------------------------------------------------------------------------------gtatcaggtttctgtgtttgattcagttgtccaaggaggtgactcagtttgggagGGTCTTCGAGTGTATAATGGAAAGATATTTAAGCTTGAGGAACATCTAGACAG
                                                                                                | | ||||||| |||||||| || ||||||||||| ||||| ||||| |||||||| |||||| | || || || ||||||||||||||||| || ||| |||| | 
gtactcttatattggatatttggagaatcttcctggaaaattttaacatcattgagctctcagtttatgtttctgatgcataattttgtgattttttttaagGTTTCGGTGTTTGACTCTGTTGTCCAAGGTGGTGATTCAGTGTGGGAGGGGCTTCGAATTTACAACGGGAAGATATTTAAGCTTGAAGAGCATTTAGATA-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatcaggtttctgtgtttgattcagttgtccaaggaggtgactcagtttgggagGGTCTTCGAGTGTATAATGGAAAGATATTTAAGCTTGAGGAACATCTAGACAG
               gtttgat  putative branch site (score: 5)
                tttgatt  TA-rich tract