1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatggggggaagcacttgttttttatattcccaagtaggttaatatgatctcataattttttttccttgcaagatataaattatttctccctggtctgcagGTTCCTAGTAAGTCAAGGGTGTATCAAACCCTTGTGTGATCTTCTCATCTGTCCTGATCCTAGGATTGTGACAGTTTGTCTGGAAGGCCTTGAAAACATC
species | Glycine max |
transcript | GLYMA10G29000.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAA GTTCCTAGTAAGTCAAGGGTGTATCAAACCCTTGTGTGATCTTCTCATCTGEST: gi|298166384|gb|HO010963.1|HO010963
genomic: GCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatgggggg ... tggtctgcagGTTCCTAGTAAGTCAAGGGTGTATCAAACCCTTGTGTGATCTTCTCATCTG
EST: GCTTGGGCTATCTCGAATGCTACATCCGGTGGTTCTCATGAACAAATCAA GTTCCTAGTAAGTCAAGGGTGTATCAAACCCTTGTATGATCTTCTCATCTGEST: gi|120492247|gb|EH220414.1|EH220414
genomic: GCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatgggggg ... tggtctgcagGTTCCTAGTAAGTCAAGGGTGTATCAAACCCTTGTGTGATCTTCTCATCTG
EST: CATCCGGTGGTTCTCATGAACAAATCAA GTTCCTAGTAAGTCAAGGGTGTATCAAACCCTTGTGTGATCTTCTCATCTGEST: gi|298172729|gb|HO019769.1|HO019769
genomic: CATCCGGTGGTTCTCATGAACAAATCAAgtatgggggg ... tggtctgcagGTTCCTAGTAAGTCAAGGGTGTATCAAACCCTTGTGTGATCTTCTCATCTG
EST: GCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAA GTTCCTAGTAAGTCAAGGGTGTATCAAACCCTTGTGTGATCTTCTCATCTGEST: gi|192301983|gb|FG995153.1|FG995153
genomic: GCTTGGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatgggggg ... tggtctgcagGTTCCTAGTAAGTCAAGGGTGTATCAAACCCTTGTGTGATCTTCTCATCTG
EST: GGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAA GTTCCTAGTAAGTCAAGGGTGTATCAAACCCTTGTGTGATCTTCTCATCTG
genomic: GGGCTATCTCAAATGCTACATCCGGTGGTTCTCATGAACAAATCAAgtatgggggg ... tggtctgcagGTTCCTAGTAAGTCAAGGGTGTATCAAACCCTTGTGTGATCTTCTCATCTG
gatctcataattttttttccttgcaagatataaattatttctccctggtctgcagGTTCCTAGTAAGTCAAGGGTGTATCAAACCCTTGTGTGATCTTCTCATCTGTCCTGATCCTAGGATTGTGACAGTTTGTCTGGAAGGCCTTGAAAACATC
tttctccctggtct CT-rich tract
ataattttttttcctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggggggaagcacttgttttttatattcccaagtaggttaatatgatctcataattttttttccttgcaagatataaattatttctccctggtctgcagGTTCCTAGTAAGTCAAGGGTGTATCAAACCCTTGTGTGATCTTCTCATCTGTCCTGATCCTAGGATTGTGACAGTTTGTCTGGAAGGCCTTGAAAACATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG