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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacttttaatttttacatcgctatagttgatacttttgtatctaaactctgacaagcaagctattttatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT

Basic information

species Glycine max
transcript GLYMA10G28890.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G28890.2 (Glycine max), 3'ss of exon 9
lower sequence: AT1G56340.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaaacttttaatttttacatcgctatagttgatacttttgtatc--taaactctgacaagcaagc---tattttatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT
||||       || ||  ||  |  | | ||    ||||  ||    || |   |   ||  || |   |  ||  | |   |||||||||||||| | ||||| |||||||||||  | |  ||||| || ||||| |||||| || |||  || ||||| ||||| ||||||||||||
gtaataagaatatcttatcactgaaacatttttgtctttcataatggtatatgtttgaaactaaacacatgattgttttggtagGTGAAATCTGGTTCCTTGTTCGACAATGTCTTGGTCAGCGATGACCCAGAGTACGCTAAGAAGTTGGCCGAGGAAACCTGGGGAAAGCACAAGGAT

upper sequence: GLYMA10G28890.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv07s0005g01390.t01 (Vitis vinifera), 3'ss of exon 9
gtaa--acttttaatttttacatcgctatagttgatacttttgtatctaaactctga-caagcaagctat----tttatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT
||||  |  | ||   |||||   | |    ||  ||  ||   ||  | |  || | |||||||||||     |  ||    |||||||||||||| ||  |||| |||||| | ||  ||   ||||||||||| ||||| ||| |||| | ||||||||| ||||| |||||||||| |
gtaatcatctctatggtttaccctg-tgctattcttaaattataattcacatcctaatcaagcaagctacaaaatgcatgcaccagGTGAAATCTGGGACCATGTTCGACAATATTTTGGTTTGCGATGATCCTGATTATGCAAAGAAGCTTGCTGAAGAAACTTGGGGAAAGCACAAGGGT

upper sequence: GLYMA10G28890.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv14s0060g01290.t01 (Vitis vinifera), 3'ss of exon 9
----------------------gtaaacttttaatttttacatcgctat---agttgatacttttgt-----atctaaactctgacaagcaagctattttatcttac-agGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT
                       ||  |||||| ||||||  || ||||   | |  |    ||  |     ||  ||| ||| | | |  ||    |  || |  | |||||||||| || || ||||| ||||||||||| |||  ||||||||| |||||||| |||||  |||| ||||||||||||| |||| ||||||||
gtaatgtctgttttgttttattttattcttttattttttatttctctatttaattctaaggcttcctgagcaattcaaattctaatatgtgaggatgtacatttggccagGTGAAATCAGGGACCTTGTTCGACAATGTCTTGATTTGTGATGATCCGGAGTATGCAAAGCAATTGGTAGAAGAAACATGGGCCAAGTACAAGGAT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207761356|gb|GD733727.1|GD733727
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGAATACCTA
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGA-T-CCT-
EST: gi|207793849|gb|GD763823.1|GD763823
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|21677154|gb|BQ629505.1|BQ629505
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTCGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|10842878|gb|BF066239.1|BF066239
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|208325996|gb|GE119706.1|GE119706
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|193590799|gb|FK545904.1|FK545904
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|7147106|gb|AW509028.1|AW509028
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|14259040|gb|BG881948.1|BG881948
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|208075929|gb|GD878610.1|GD878610
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|208073441|gb|GD867358.1|GD867358
EST:     ACCTCTATGTTCTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTTGTACAATGTCTTAATTACTGATGATTCCT
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTT-G-ACAATGTCTTAATTACTGATGAT-CCT
EST: gi|24135631|gb|BU926141.1|BU926141
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|298191551|gb|HO039030.1|HO039030
EST:     ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTC
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTC
EST: gi|120529175|gb|EH257309.1|EH257309
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|207836212|gb|GD807455.1|GD807455
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|193722198|gb|FK660808.1|FK660808
EST:     GGATTGAATTGTGGTCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGA
genomic: GGATTGAATTGTGG-CAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGA
EST: gi|193539864|gb|FK493850.1|FK493850
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|19938515|gb|BQ081756.1|BQ081756
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATT
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATT
EST: gi|6481781|gb|AW201052.1|AW201052
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|12689947|gb|BG156283.1|BG156283
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|193364376|gb|FK328881.1|FK328881
EST:     GGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: GGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|208261725|gb|GE060500.1|GE060500
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGAGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|207765184|gb|GD735457.1|GD735457
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|18735107|gb|BM528567.1|BM528567
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|193660566|gb|FK601614.1|FK601614
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|208083454|gb|GD883530.1|GD883530
EST:     TTGAAGTACGTGGGCATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTT
genomic: TTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTT
EST: gi|208156135|gb|GD952805.1|GD952805
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|19053178|gb|BM731845.1|BM731845
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|207708279|gb|GD690423.1|GD690423
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAAATCTGGTACTTTGTTTGACTAATGTCTTAATTACTGATGATCCTG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAA-TCTGGTACTTTGTTTGAC-AATGTCTTAATTACTGATGATCCTG
EST: gi|193452010|gb|FK418444.1|FK418444
EST:     TTCCCCAACGTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: TTCCCCAAC-TTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|193361799|gb|FK327745.1|FK327745
EST:     ACCTCTATGTTTACCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|18040310|gb|BM308604.1|BM308604
EST:     CCTCTATGTTTTCCCCAACTTTGA-GTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGAC
genomic: CCTCTATGTTTTCCCCAACTT-GAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGAC
EST: gi|208332038|gb|GE127701.1|GE127701
EST:     ACCTCTATGTTCTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATACCTAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGAT-CCT-G
EST: gi|193343559|gb|FK306923.1|FK306923
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTA
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTA
EST: gi|4290764|gb|AI441665.1|AI441665
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|208330952|gb|GE128557.1|GE128557
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|23728381|gb|BU762243.1|BU762243
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACA
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACA
EST: gi|193707216|gb|FK644954.1|FK644954
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|208332930|gb|GE129125.1|GE129125
EST:     ACCTCTATGTTTTCTCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|19453199|gb|BM954609.1|BM954609
EST:     ACCTATATGTTTTCCCCAACTTGAAGTACGTGGGCATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGA
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGA
EST: gi|17518857|gb|BM187899.1|BM187899
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|207690436|gb|GD670548.1|GD670548
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|193420306|gb|FK392164.1|FK392164
EST:     TTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: TTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|207845925|gb|GD820254.1|GD820254
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|208285399|gb|GE089125.1|GE089125
EST:     ACCTCTATGTTTTCCCC-ACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|208221973|gb|GE017723.1|GE017723
EST:     ACCTCTATG-TTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|7234631|gb|AW569967.1|AW569967
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|151411454|gb|EV281265.1|EV281265
EST:     ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: ACCTCTATGTTTTCCCCAACTTGAAGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
EST: gi|208142791|gb|GD942341.1|GD942341
EST:     AGTACGTGGGGATTGAATTGTGGCAG                         GTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG
genomic: AGTACGTGGGGATTGAATTGTGGCAGgtaaactttt ... tatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatagttgatacttttgtatctaaactctgacaagcaagctattttatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT
                         ctctgac  putative branch site (score: 3)
                                          ttttatctt  putative PPT
                                        tattttatcttaca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaacttttaatttttacatcgctatagttgatacttttgtatctaaactctgacaagcaagctattttatcttacagGTGAAATCTGGTACTTTGTTTGACAATGTCTTAATTACTGATGATCCTGAGTATGCTAAGCAGCTGGTTGAAGAAACATGGGGCAAGCACAAGGAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA