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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tggcctatttgatgacttgatcaattatataggttgccttgcttacttatgcagtgccagtattataacatgtaaatgatcatttgttgtgtgttaatagGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG

Basic information

species Glycine max
transcript GLYMA10G28530.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G28530.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 9
tggcctatttgatgacttgatcaattatataggttgccttgcttacttatgcagtgccagtatt-----ataacatgtaaatgatcatttgttgt-gtgttaatagGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG
      |||  |  | ||| |  || ||| |   |   |      | | |  | | |  ||| |     |   ||| |     |||   | | || || ||   ||||| ||||||||||||||||||| || ||||| ||||||||||| || |||||||| || |||||||| || |||||||| || ||||||||||||
----tcattcca--atttggttgataatagatactcattcttcctcctgtctaattcttgtaatcatccagtccatttgccaaatctaatatggttgtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9983502|gb|BE657610.1|BE657610
EST:     GGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAG                         GTTNNGGGCANTCCAACAAGGGAAGAGATTAAGTGCATGNNNCCTAATTAT
genomic: GGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAGgtaatctttg ... gtgttaatagGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTAT
EST: gi|151395928|gb|EV265805.1|EV265805
EST:     CTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAG                         GTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTAT
genomic: CTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAGgtaatctttg ... gtgttaatagGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTAT
EST: gi|21677182|gb|BQ629533.1|BQ629533
EST:     CTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAG                         GTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTAT
genomic: CTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAGgtaatctttg ... gtgttaatagGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTAT
EST: gi|27426035|gb|CA937555.1|CA937555
EST:     CTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAG                         GTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTAT
genomic: CTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAGgtaatctttg ... gtgttaatagGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTAT
EST: gi|9205358|gb|BE331582.1|BE331582
EST:     CTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAG                         GTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTAT
genomic: CTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAGgtaatctttg ... gtgttaatagGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTAT
EST: gi|6566727|gb|AW234359.1|AW234359
EST:     CTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAG                         GTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTAT
genomic: CTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAGgtaatctttg ... gtgttaatagGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTAT
EST: gi|151411363|gb|EV281174.1|EV281174
EST:     CTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAG                         GTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTAT
genomic: CTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAGgtaatctttg ... gtgttaatagGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTAT
EST: gi|16104780|gb|BI892520.1|BI892520
EST:     CTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAG                         GTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTAT
genomic: CTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAGgtaatctttg ... gtgttaatagGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTAT
EST: gi|19453358|gb|BM954768.1|BM954768
EST:     CTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAG                         GTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTAT
genomic: CTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAGgtaatctttg ... gtgttaatagGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTAT
EST: gi|10710608|gb|BF010326.1|BF010326
EST:     CTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAG                         GTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTAT
genomic: CTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAGgtaatctttg ... gtgttaatagGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTAT
EST: gi|5058458|gb|AI736869.1|AI736869
EST:     TTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGGAGAATATCAAG                         GTTCTGGGCACTCCCACAAGGGAAGAGATTAAGTGCATGAACCCTAATTAT
genomic: TTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTG-AGATTATCAAGgtaatctttg ... gtgttaatagGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTAT
EST: gi|31307101|gb|CD392304.1|CD392304
EST:     AGATTATCAAG                         GTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTAT
genomic: AGATTATCAAGgtaatctttg ... gtgttaatagGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTAT
EST: gi|10843615|gb|BF066891.1|BF066891
EST:     CTGTGTTCCCTGGTGAGAGTGGAGTTGATCAACTAGTTGAGATTATCAAT                         GTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATTGA-CCCTAATTA
genomic: CTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAGgtaatctttg ... gtgttaatagGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCAT-GAACCCTAATTA
EST: gi|24206278|gb|BU965531.1|BU965531
EST:     CTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAG                         GTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTATTTAT
genomic: CTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAGgtaatctttg ... gtgttaatagGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTAT
EST: gi|6073128|gb|AW102515.1|AW102515
EST:     CTTTGTTCCCTGGTGAGAGTGGAGT-GATCAACTTGTTGAGATTATCAAG                         -TTCTGGGCACTTCAACAAGGGAAGAGAT-AAGTGCATGAACCCCTA-TTA
genomic: CTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAGgtaatctttg ... gtgttaatagGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCC-TAATTA
EST: gi|7926372|gb|AW832398.1|AW832398
EST:     CTTTGTTCCCTGGAGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAG                         GTTCTGGGCACTCCAACAAGGGAAGATATTAAGTGCATGAACCCTAATTAT
genomic: CTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAGgtaatctttg ... gtgttaatagGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTAT
EST: gi|23729240|gb|BU762707.1|BU762707
EST:     CTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAG                         GTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTAT
genomic: CTTTGTTCCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAGgtaatctttg ... gtgttaatagGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTAT
EST: gi|254344096|gb|GR851006.1|GR851006
EST:     TGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAG                         GTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTAT
genomic: TGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAGgtaatctttg ... gtgttaatagGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttatgcagtgccagtattataacatgtaaatgatcatttgttgtgtgttaatagGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG
                 ttataac  putative branch site (score: 2)
               tattataacatgtaaa  TA-rich tract