1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaatgtcggattttgtcacctggttggcttaattcccgataaatcttgcattaaatcaattgtagacatattatacttaaacaaatattttctgtttatcatcagGTCCAATCAAGCTTAGCTCCTTCATCAGCAGATCCCCATGGCTTTTGGCATGATTGCAGATTAAATCATGCTAAATGTACTTCTTCACAAATCCAATATT
species | Glycine max |
transcript | GLYMA10G28230.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTATTAGAACCCCGCTATTCATTCTTAATACTGCCTATGACTCATGGCAG GTCCAATCAAGCTTAGCTCCTTCATCAGCAGATCCCCATGGCTTTTGGCATEST: gi|209706964|gb|BW661523.1|BW661523
genomic: GTATTAGAACCCCGCTATTCATTCTTAATACTGCCTATGACTCATGGCAGgtaaatgtcg ... ttatcatcagGTCCAATCAAGCTTAGCTCCTTCATCAGCAGATCCCCATGGCTTTTGGCAT
EST: ACTGCCTATGACTCATGGCAG GTCCAATCAAGCTTAGCTCCTTCATCAGCAGATCCCCATGGCTTTTGGCATEST: gi|151393518|gb|EV263393.1|EV263393
genomic: ACTGCCTATGACTCATGGCAGgtaaatgtcg ... ttatcatcagGTCCAATCAAGCTTAGCTCCTTCATCAGCAGATCCCCATGGCTTTTGGCAT
EST: GTATTAGAACCCCGCTATTCATTCTTAATACTGCCTATGACTCATGGCAG GTCCAATCAAGCTTAGCTCCTTCATCAGCAGATCCCCATGGCTTTTGGCAT
genomic: GTATTAGAACCCCGCTATTCATTCTTAATACTGCCTATGACTCATGGCAGgtaaatgtcg ... ttatcatcagGTCCAATCAAGCTTAGCTCCTTCATCAGCAGATCCCCATGGCTTTTGGCAT
ttaaatcaattgtagacatattatacttaaacaaatattttctgtttatcatcagGTCCAATCAAGCTTAGCTCCTTCATCAGCAGATCCCCATGGCTTTTGGCATGATTGCAGATTAAATCATGCTAAATGTACTTCTTCACAAATCCAATATT
ttttctgttt CT-rich tract
atattatacttaaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgtcggattttgtcacctggttggcttaattcccgataaatcttgcattaaatcaattgtagacatattatacttaaacaaatattttctgtttatcatcagGTCCAATCAAGCTTAGCTCCTTCATCAGCAGATCCCCATGGCTTTTGGCATGATTGCAGATTAAATCATGCTAAATGTACTTCTTCACAAATCCAATATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT