1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtgggaggggtagagctagttgactattatacccttttctaaagctgagcagaaaattcttcgggattcttattattgtctatgatgcataattgattagGTTCTAGCATGTGCAAATGGTGATAGCGATGGGGTTGTTGAGATGTCCAGGAGACTAGGGTTCCTCACTGGAATGGAATCAGATGTGATGCTAGATGCCC
species | Glycine max |
transcript | GLYMA10G27970.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GAGCAGCACGTGATTACCCTAAAACATTTGTTGATGATTATTTAAGAATG GTTCTAGCATGTGCAAATGGTGATAGCGATGGGGTTGTTGAGATGTCCAGGEST: gi|51335632|gb|CO979498.1|CO979498
genomic: GAGCAGCACGTGATTACCCTAAAACATTTGTTGATGATTATTTAAGAATGgttggttctc ... aattgattagGTTCTAGCATGTGCAAATGGTGATAGCGATGGGGTTGTTGAGATGTCCAGG
EST: GAGCAGCACGTGATTACCCTAAAACATTTGTTGATGATTATTTAAGAATG GTTCTAGCATGTGCAAATGGTGATAGCGATGGGGTTGTTGAGATGTCCAGG
genomic: GAGCAGCACGTGATTACCCTAAAACATTTGTTGATGATTATTTAAGAATGgttggttctc ... aattgattagGTTCTAGCATGTGCAAATGGTGATAGCGATGGGGTTGTTGAGATGTCCAGG
tgagcagaaaattcttcgggattcttattattgtctatgatgcataattgattagGTTCTAGCATGTGCAAATGGTGATAGCGATGGGGTTGTTGAGATGTCCAGGAGACTAGGGTTCCTCACTGGAATGGAATCAGATGTGATGCTAGATGCCC
attcttattattgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggaggggtagagctagttgactattatacccttttctaaagctgagcagaaaattcttcgggattcttattattgtctatgatgcataattgattagGTTCTAGCATGTGCAAATGGTGATAGCGATGGGGTTGTTGAGATGTCCAGGAGACTAGGGTTCCTCACTGGAATGGAATCAGATGTGATGCTAGATGCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- gggaggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgca