1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtttgttttgtctgtctgtaggttaggattttttaggttcctaaaaatttgtattattggttttgtggagttgatgttaaatatgaagctttgctgtagGTATGTGCTATTAAAGCCCCTGGTTTTGGCGAAAATAGGAAAGCCAATCTTCAAGATCTTGCAGTTCTCACAGGAGGAGCA
species | Glycine max |
transcript | GLYMA10G25630.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTGATGCACTTGCAACTCTTATTCTAAATAAGCTTCGGGCTGGAATTAAG GTATGTGCTATTAAAGCCCCTGGTTTTGGCGAAAATAGGAAAGCCAATCTTEST: gi|16279519|gb|BI943478.1|BI943478
genomic: GTGATGCACTTGCAACTCTTATTCTAAATAAGCTTCGGGCTGGAATTAAGgtttgttttg ... tttgctgtagGTATGTGCTATTAAAGCCCCTGGTTTTGGCGAAAATAGGAAAGCCAATCTT
EST: GTGATGCACTTGCAACTCTTATTCTAAATAAGCTTCGGGCTGGAATTAAG GTATGTGCTATTAAAGCCCCTGGTTTTGGCGAAAATAGGAAAGCCAATCTTEST: gi|16279534|gb|BI943486.1|BI943486
genomic: GTGATGCACTTGCAACTCTTATTCTAAATAAGCTTCGGGCTGGAATTAAGgtttgttttg ... tttgctgtagGTATGTGCTATTAAAGCCCCTGGTTTTGGCGAAAATAGGAAAGCCAATCTT
EST: GTGATGCACTTGCAACTCTTATTCTAAATAAGCTTCGGGCTGGAATTAAC GTATGTGCTATTAAAACCCCTGGTTTTTGGCGAAATTCG-AAAGCCAATCTEST: gi|16282060|gb|BI944814.1|BI944814
genomic: GTGATGCACTTGCAACTCTTATTCTAAATAAGCTTCGGGCTGGAATTAAGgtttgttttg ... tttgctgtagGTATGTGCTATTAAAGCCCCTGGTTTT-GGCGAAAATAGGAAAGCCAATCT
EST: GTGATGCACTTGCAACTCTTATTCTAAATAAGCTTCGGGCTGGAATTAAG GTATGTGCTATTAAAGCCCCTGGTTTTGGCGAAAATAGGAAAGCCAATCTT
genomic: GTGATGCACTTGCAACTCTTATTCTAAATAAGCTTCGGGCTGGAATTAAGgtttgttttg ... tttgctgtagGTATGTGCTATTAAAGCCCCTGGTTTTGGCGAAAATAGGAAAGCCAATCTT
aaatttgtattattggttttgtggagttgatgttaaatatgaagctttgctgtagGTATGTGCTATTAAAGCCCCTGGTTTTGGCGAAAATAGGAAAGCCAATCTTCAAGATCTTGCAGTTCTCACAGGAGGAGCA
agttgat putative branch site (score: 5)
ctttgct putative PPT
ttgatgttaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttttgtctgtctgtaggttaggattttttaggttcctaaaaatttgtattattggttttgtggagttgatgttaaatatgaagctttgctgtagGTATGTGCTATTAAAGCCCCTGGTTTTGGCGAAAATAGGAAAGCCAATCTTCAAGATCTTGCAGTTCTCACAGGAGGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA