1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...attttcaatatatcatagcatcagcatgtgtttttttatgaatcttgcatactttatgttttttgagatacctttctgacttaccgtgctcattttgcagCGTACTAAAGAAATGATGTGTACAAAGGCTGATGGATGTTCGAATGGTTTGCCTTGTATTTTGAGGATATCTTCTGATTTTTTTATTTTATTTCTACCAT
species | Glycine max |
transcript | GLYMA10G05870.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCCTACTTATACAA CGTACTAAAGAAATGATGTGTACAAAGGCTGATGGATGTTCGAATGGTTTGEST: gi|18730524|gb|BM525925.1|BM525925
genomic: GATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCCTACTTATACAAgtaaggctcc ... cattttgcagCGTACTAAAGAAATGATGTGTACAAAGGCTGATGGATGTTCGAATGGTTTG
EST: GATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCCTACTTATACAA CGTACTAAAGAAATGATGTGTACAAAGGCTGATGGATGTTCGAATGGTTTGEST: gi|16346378|gb|BI971973.1|BI971973
genomic: GATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCCTACTTATACAAgtaaggctcc ... cattttgcagCGTACTAAAGAAATGATGTGTACAAAGGCTGATGGATGTTCGAATGGTTTG
EST: GATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCCTACTTATACAA CGTACTAAAGAAATGATGTGTACAAAGGCTGATGGATGTTCGAATGGTTTG
genomic: GATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCCTACTTATACAAgtaaggctcc ... cattttgcagCGTACTAAAGAAATGATGTGTACAAAGGCTGATGGATGTTCGAATGGTTTG
tgcatactttatgttttttgagatacctttctgacttaccgtgctcattttgcagCGTACTAAAGAAATGATGTGTACAAAGGCTGATGGATGTTCGAATGGTTTGCCTTGTATTTTGAGGATATCTTCTGATTTTTTTATTTTATTTCTACCAT
gacttac putative branch site (score: 2)
ctcatttt putative PPT
actttatgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttcaatatatcatagcatcagcatgtgtttttttatgaatcttgcatactttatgttttttgagatacctttctgacttaccgtgctcattttgcagCGTACTAAAGAAATGATGTGTACAAAGGCTGATGGATGTTCGAATGGTTTGCCTTGTATTTTGAGGATATCTTCTGATTTTTTTATTTTATTTCTACCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT