Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtatttattatctttgctcttcagtaatcttcttgtaattgtctctctgaatcagtttggatatttttttattctactgatgcttttggtgcagTTAATCATCTGGATTACTTGGGAGTGCAGGTGGCATGGATATCTGGATCTTGGTTTCTATCAATCTTTGTAAACATAATTCCTTGGGAAAGTG

Basic information

species Glycine max
transcript GLYMA10G05490.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G05490.1 (Glycine max), 3'ss of exon 9
lower sequence: AT2G37290.1 (Arabidopsis thaliana), 3'ss of exon 8
gtttgtatttattatctttgctcttcagtaatcttcttgtaattgtctctctga-----atcagtttggatatttttt-tattctactgatgcttttggtgcagTTAATCATCTGGATTACTTGGGAGTGCAGGTGGCATGGATATCTGGATCTTGGTTTCTATCAATCTTTGTAAACATAATTCCTTGGGAAAGTG
||| ||  || | ||||  | | ||||    |||  |  || || |||| || |     | || | ||    ||| || ||||| | | || ||  || |||||||||||||||||||||||||||||||||||| |||||||| |||||  | ||||| ||||| || ||||| ||||| |||||||||||| | |
gttcgttattttcatct--gatattcaagtttctcttcatatttttctcccttatacagagcaatgtgatcgtttcttctattccaataatcctcctgatgcagTTAATCATCTGGATTACTTGGGAGTGCAGGTTGCATGGATCTCTGGCCCATGGTTCCTATCTATTTTTGTCAACATTATTCCTTGGGAATGCG

upper sequence: GLYMA10G05490.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv08s0040g03050.t01 (Vitis vinifera), 3'ss of exon 8
gtttgtat-ttattatc-tttgctcttca-gtaatcttcttgt--aattgtctctct-----gaatcagtttggatatttttttattctactgatgcttttggtgcagTTAATCATCTGGATTACTTGGGAGTGCAGGTGGCATGGATATCTGGATCTTGGTTTCTATCAATCTTTGTAAACATAATTCCTTGGGAAAGTG
|||| | | || ||||| |||| |  | | |||  | || |    |||||| | | |     |||  | ||||  || | | || |  |  | ||||||   ||||||||| ||||||||||| ||| |||||||||||||| ||||| |||||| |||||||||| || || ||||| || || ||||| ||||||||||
gtttatctcttgttatcatttgtttattatgtatccatcctcctaaattgtttttgttacatgaagtaatttgattagtatcttgtctt--ttatgcttcctgtgcagTTAGTCATCTGGATTGCTTAGGAGTGCAGGTGGCCTGGATCTCTGGACCTTGGTTTCTTTCCATTTTTGTGAATATTATTCCATGGGAAAGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193375747|gb|FK341720.1|FK341720
EST:     GAGGAATTAATGCGTGAAAGATTTCCTAAACTGG                         TTAATCATCTGGATTACTTGGGAGTGCAGGTGGCATGGATATCTGGATCTT
genomic: GAGGAATTAATGCGTGAAAGATTTCCTAAACTGGgtttgtattt ... tttggtgcagTTAATCATCTGGATTACTTGGGAGTGCAGGTGGCATGGATATCTGGATCTT
EST: gi|193493307|gb|FK460057.1|FK460057
EST:     GGACCAGCTTATTTTTGAGGAATTAATGCGTGAAAGATTTCCTAAACTGG                         TTAATCATCTGGATTACTTGGGAGTGCAGGTGGCATGGATATCTGGATCTT
genomic: GGACCAGCTTATTTTTGAGGAATTAATGCGTGAAAGATTTCCTAAACTGGgtttgtattt ... tttggtgcagTTAATCATCTGGATTACTTGGGAGTGCAGGTGGCATGGATATCTGGATCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtctctctgaatcagtttggatatttttttattctactgatgcttttggtgcagTTAATCATCTGGATTACTTGGGAGTGCAGGTGGCATGGATATCTGGATCTTGGTTTCTATCAATCTTTGTAAACATAATTCCTTGGGAAAGTG
                                   tactgat  putative branch site (score: 2)
                                         tgctttt  CT-rich tract
                tttggatattttttta  TA-rich tract