Sequence
atgc intronic sequence ATGC exonic sequencegtgttgtatggtgtgccattttctaaattcttagatttgtgatattatatatttgggtatggatttacctttgtgctgcattcttctttagGCTCATCCATTCTTCAAAGGTGTTGAATGGAATAAGTTGTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACTCAGAATTTTG
Basic information
species | Glycine max |
transcript | GLYMA10G04410.3 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G04410.3 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os10g33640.1 (Oryza sativa), 3'ss of exon 8
-----------------------gtgttgtatggtgt----gccattttctaaattcttagatttgtgatattatatatttgggtatggattt-------acctttgtgc-----tgcattcttctttagGCTCATCCATTCTTCAAAGGTGTTGAATGGAATAAGTTGTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACTCAGAATTTTG
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gttgttgtgtgttctttaatatagtgttttacattccttaaagcaattttttgcttccttgtccaaggaaatattagatatgctaatgaatttcgttaatagtattttgcatgtatatgtttggttttagGAGCACTCCTGGTTTAGTGGAGTAGAATGGGACAAATTATATGAAATAGAAGCAGCATATCAACCTCAAGTCACTGATGAGTTAGATACTCAGAATTTTG
upper sequence: GLYMA10G04410.3 (Glycine max), 3'ss of exon 9
lower sequence: Vv07s0005g03690.t01 (Vitis vinifera), 3'ss of exon 8
gtgttgtatggtgtgccattttctaaattcttagatttgtgatattatatatt-tgggtat--ggatttacctttgtgctgcattcttctttagGCTCATCCATTCTTCAAAGGTGTTGAATGGAATAAGTTGTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACTCAGAATTTTG
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gtattgtatggtgtgtcctagtctaaattattggatttcattaaaagtaggttgcaaataaaagggattatctggttgcttcttccattttcagGTACACCCATGGTTTGAAGGTACTGAATGGGATAGACTATATCTTATGGAAGCTGCATTTATTCCCGAGGTCAGAGATGAATTAGATACTCAGAATTTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9986562|gb|BE660670.1|BE660670EST: TGTGTAATGTCAATCAAAGGCTGGGGTCAAAAGGTGCAGATGAAATAAAG GCTCATCCATTCTTCAAAGGTGTTGAATGGAATAAGTTGTATCAAATGGAA
genomic: TGTGTAATGTCAATCAAAGGCTGGGGTCAAAAGGTGCAGATGAAATAAAGgtgttgtatg ... tcttctttagGCTCATCCATTCTTCAAAGGTGTTGAATGGAATAAGTTGTATCAAATGGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtgatattatatatttgggtatggatttacctttgtgctgcattcttctttagGCTCATCCATTCTTCAAAGGTGTTGAATGGAATAAGTTGTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACTCAGAATTTTG
ctgcattcttcttt CT-rich tract
atattatatattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgttgtatggtgtgccattttctaaattcttagatttgtgatattatatatttgggtatggatttacctttgtgctgcattcttctttagGCTCATCCATTCTTCAAAGGTGTTGAATGGAATAAGTTGTATCAAATGGAAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAGATACTCAGAATTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC