1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...atacgtgcacactttctaatttcaaaccactagttttgtaaatttgtataataaacttgtgtatgagtaatagttgttctttttaatatatacataacagGGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAG
species | Glycine max |
transcript | GLYMA10G03740.3 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG GGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTAEST: gi|12496411|gb|BG047051.1|BG047051
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tacataacagGGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
EST: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG GGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTAEST: gi|15286301|gb|BI470192.1|BI470192
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tacataacagGGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
EST: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG GGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTAEST: gi|16347393|gb|BI972988.1|BI972988
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tacataacagGGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
EST: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG GGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... tacataacagGGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTA
gtataataaacttgtgtatgagtaatagttgttctttttaatatatacataacagGGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAG
ttttaat putative branch site (score: 3)
taatagttgttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atacgtgcacactttctaatttcaaaccactagttttgtaaatttgtataataaacttgtgtatgagtaatagttgttctttttaatatatacataacagGGAAAGTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - -tgcacac
- - - - - - - - - - -tcaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtatga