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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcacactttctaatttcaaaccactagttttgtaaatttgtataataaacttgtgtatgagtaatagttgttctttttaatatatacataacagggaaagTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAG

Basic information

species Glycine max
transcript GLYMA10G03740.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11411574|gb|BF423585.1|BF423585
EST:     GAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGGGAAAG                    
genomic: GAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCT----G--AGgtaagtcaat ... acagg
EST: gi|192322570|gb|FK014691.1|FK014691
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGGGAAAG                    
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCT----G--AGgtaagtcaat ... acagg
EST: gi|22927402|gb|BU544541.1|BU544541
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGGGAAAG                    
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCT----G--AGgtaagtcaat ... acagg
EST: gi|8825678|gb|BE209471.1|BE209471
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGGGAAAG                    
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCT----G--AGgtaagtcaat ... acagg
EST: gi|22523475|gb|BU082286.1|BU082286
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|22523475|gb|BU082286.1|BU082286
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|22523475|gb|BU082286.1|BU082286
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|22523475|gb|BU082286.1|BU082286
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|22523475|gb|BU082286.1|BU082286
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|22523475|gb|BU082286.1|BU082286
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|22523475|gb|BU082286.1|BU082286
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|15001224|gb|BI322038.1|BI322038
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|15001224|gb|BI322038.1|BI322038
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|15001224|gb|BI322038.1|BI322038
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|15001224|gb|BI322038.1|BI322038
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|15001224|gb|BI322038.1|BI322038
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|15001224|gb|BI322038.1|BI322038
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|15001224|gb|BI322038.1|BI322038
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|15286301|gb|BI470192.1|BI470192
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|15286301|gb|BI470192.1|BI470192
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|15286301|gb|BI470192.1|BI470192
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|15286301|gb|BI470192.1|BI470192
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|15286301|gb|BI470192.1|BI470192
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|15286301|gb|BI470192.1|BI470192
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|15286301|gb|BI470192.1|BI470192
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|209705614|gb|BW673583.1|BW673583
EST:     TGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCATCTGAGGGAAAG                         TCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTACACTG
genomic: TGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCT----G--AGgtaagtcaat ... acagggaaagTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTACACTG
EST: gi|19347352|gb|BM892232.1|BM892232
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|19347352|gb|BM892232.1|BM892232
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|19347352|gb|BM892232.1|BM892232
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|19347352|gb|BM892232.1|BM892232
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|19347352|gb|BM892232.1|BM892232
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|19347352|gb|BM892232.1|BM892232
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|19347352|gb|BM892232.1|BM892232
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|12496411|gb|BG047051.1|BG047051
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|12496411|gb|BG047051.1|BG047051
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|12496411|gb|BG047051.1|BG047051
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|12496411|gb|BG047051.1|BG047051
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|12496411|gb|BG047051.1|BG047051
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|12496411|gb|BG047051.1|BG047051
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|12496411|gb|BG047051.1|BG047051
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|16347393|gb|BI972988.1|BI972988
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|16347393|gb|BI972988.1|BI972988
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|16347393|gb|BI972988.1|BI972988
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|16347393|gb|BI972988.1|BI972988
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|16347393|gb|BI972988.1|BI972988
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|16347393|gb|BI972988.1|BI972988
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|16347393|gb|BI972988.1|BI972988
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAG                         G
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGgtaagtcaat ... acagggaaag-
EST: gi|23064089|gb|BU578862.1|BU578862
EST:     TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCTGAGGGATTG                    
genomic: TTACCATGAGGACACCTACTAGGAAGATTCGAAAGAGTGAATCGTCT----GA--Ggtaagtcaat ... acagg


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaacttgtgtatgagtaatagttgttctttttaatatatacataacagggaaagTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAG
                                        acataac  putative branch site (score: 3)
                taatagttgttctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcacactttctaatttcaaaccactagttttgtaaatttgtataataaacttgtgtatgagtaatagttgttctttttaatatatacataacagggaaagTCGGGTTCTGAAGCAAAAACTGCAGCAGGGGTTTAAACAGCATTACACTGCTTCAATTGTTATACTTGAAGAAACCAGCTGGTGCCTCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- -cactttc
- - - - - - - -tcaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgtatga