1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tgtgattgcattttctcttaactagcttgtttgtagatattcataatagttcccttgttatcttttcatacttctgaagaggtctgtgattcacattcagGTTTTAGGTACCCCAACAAGGGAAGAAATCAAGTGCATGAATCCTAATTATACCGAGTCCAAATTTCCACAAATTAAAGCTCACCCATGGCACAAG
species | Glycine max |
transcript | GLYMA10G01280.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTTGTTGAAATTATC-AG GTTTTAGGTACCCCAACAAGGGAAGAAATCAAGTGCATGAATCCTAATTATEST: gi|151393723|gb|EV263598.1|EV263598
genomic: CTTGTTGAAATTATCAAGgtaagataag ... tcacattcagGTTTTAGGTACCCCAACAAGGGAAGAAATCAAGTGCATGAATCCTAATTAT
EST: CTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG GTTTTAGGTACCCCAACAAGGGAAGAAATCAAGTGCATGAATCCTAATTATEST: gi|151399753|gb|EV269624.1|EV269624
genomic: CTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAGgtaagataag ... tcacattcagGTTTTAGGTACCCCAACAAGGGAAGAAATCAAGTGCATGAATCCTAATTAT
EST: CTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG GTTTTAGGTACCCCAACAAGGGAAGAAATCAAGTGCATGAATCCTAATTATEST: gi|193328222|gb|FK294243.1|FK294243
genomic: CTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAGgtaagataag ... tcacattcagGTTTTAGGTACCCCAACAAGGGAAGAAATCAAGTGCATGAATCCTAATTAT
EST: CTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG GTTTTAGGTACCCCAACAAGGGAAGAAATCAAGTGCATGAATCCTAATTAT
genomic: CTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAGgtaagataag ... tcacattcagGTTTTAGGTACCCCAACAAGGGAAGAAATCAAGTGCATGAATCCTAATTAT
atagttcccttgttatcttttcatacttctgaagaggtctgtgattcacattcagGTTTTAGGTACCCCAACAAGGGAAGAAATCAAGTGCATGAATCCTAATTATACCGAGTCCAAATTTCCACAAATTAAAGCTCACCCATGGCACAAG
ttatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgattgcattttctcttaactagcttgtttgtagatattcataatagttcccttgttatcttttcatacttctgaagaggtctgtgattcacattcagGTTTTAGGTACCCCAACAAGGGAAGAAATCAAGTGCATGAATCCTAATTATACCGAGTCCAAATTTCCACAAATTAAAGCTCACCCATGGCACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - tgcattt
- - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtctgtg