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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagaattgattactttcttccatcaaatgttctaataggtcattttataacacgtgcccacaagaatatatatttgcagGCATGCGCTTCTTTAGAACCAAACTATCAACCTCCAGTAACTTTCATAGTTGTACAAAAAAGACACCATACTCGGTTGTTTGCAAATAACCACAGGGACA

Basic information

species Glycine max
transcript GLYMA10G00530.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G00530.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv05s0020g04190.t01 (Vitis vinifera), 3'ss of exon 15
-----------------gtcagaattgattactttcttccatcaaatgttctaataggtcattttataacacgt--gcccacaagaata-tatatttgcagGCATGCGCTTCTTTAGAACCAAACTATCAACCTCCAGTAACTTTCATAGTTGTACAAAAAAGACACCATACTCGGTTGTTTGCAAATAACCACAGGGACA
                  |    |||  || | |||||  || |||  |  |   |   ||  |   ||| | |  | ||  |  |||| | | |   ||||| || |||||| ||||||||||||||||||| ||||| ||||| || || || |||||| |||| ||||| || ||||| || || |||||||||||| 
gtgagtttcagctttttattcttattttttccattctttaattaaaaatcatttgaaaccaaatagcaacccataggtccttataaataatttctacacagGCTTGTGCTTCTCTAGAACCAAACTATCAACCACCAGTTACTTTTATTGTGGTTCAAAAACGACATCATACCCGATTGTTCGCTAACAACCACAGGGACC

upper sequence: GLYMA10G00530.1 (Glycine max), 3'ss of exon 9
lower sequence: EFJ24991 (Selaginella moellendorffii), 3'ss of exon 18
-----gtcagaattgattac------tttcttccatcaaatgttctaataggtcattttataacacgtgc--ccacaag-aatatatatttgc---agGCATGCGCTTCTTTAGAACCAAACTATCAACCTCCAGTAACTTTCATAGTTGTACAAAAAAGACACCATACTCGGTTGTTTGCAAATAACCACAGGGACA
      ||||  |  |||||      ||  ||| |||| |      ||     | | || |  |   |||    | ||  ||||| | | | |   |||| || || ||||| |||  ||||||||||||||| || |||||| |||| || |||||  |||| || || |||||||||||||| || ||||  || |
gttttatcaggttctattacatgagcttgattctatcagaaaggtaaaattcacgtcttctctccgttgcagttataactaatatgtttctactctagGCGTGTGCATCTTTGGAAGGAAACTATCAACCTCCGGTGACTTTCGTAGTGGTCCAAAAGCGACATCACACACGGTTGTTTGCAAACAATCACAACGATA

upper sequence: GLYMA10G00530.1 (Glycine max), 3'ss of exon 9
lower sequence: EFJ15357 (Selaginella moellendorffii), 3'ss of exon 18
gtcagaattgattactttcttccatcaaatgttctaataggtcattttataacacgtgcccacaagaatatatatttgcagGCATGCGCTTCTTTAGAACCAAACTATCAACCTCCAGTAACTTTCATAGTTGTACAAAAAAGACACCATACTCGGTTGTTTGCAAATAACCACAGGGACA
                        | ||||   |   |   ||  |   |  ||  |  | | |    | | || |   |||| || || ||||| |||  ||||||||||||||| || |||||| |||| || |||||  |||| || || |||||||||||||| || ||||  || |
-----------------------gtaaaattcacgtct---tctctccgttgcagttaacta-atatgtttctactc-tagGCGTGTGCATCTTTGGAAGGAAACTATCAACCTCCGGTGACTTTCGTAGTGGTCCAAAAGCGACATCACACACGGTTGTTTGCAAACAATCACAATGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatgttctaataggtcattttataacacgtgcccacaagaatatatatttgcagGCATGCGCTTCTTTAGAACCAAACTATCAACCTCCAGTAACTTTCATAGTTGTACAAAAAAGACACCATACTCGGTTGTTTGCAAATAACCACAGGGACA
                    ttataac  putative branch site (score: 2)
                                   acaagaatatatattt  TA-rich tract