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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaaactttagtttggaggcactcagtgtgactagtagtgtgtcatgaagtttatcttgttagttctgatgtctttggaatatttgctattaatggcacagATTACTACTGTCAAGAGAGCAGGAGCAAGGCTTGATTGAACTGTAAATATGAAGACCAGAGATAGAAATATCTGTAATCTGGATTGAGTTTTAATAAGAC

Basic information

species Glycine max
transcript GLYMA09G41330.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254336235|gb|GR842414.1|GR842414
EST:     TTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATG                         ATTACTACTGTCAAGAGAGCAGGAGCAAGACTTGATTGAACTGTAAATATG
genomic: TTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatggaagt ... aatggcacagATTACTACTGTCAAGAGAGCAGGAGCAAGGCTTGATTGAACTGTAAATATG
EST: gi|254334604|gb|GR844389.1|GR844389
EST:     TTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATG                         ATTACTACTGTCAAGAGAGCAGGAGCAAGGCTTGATTGAACTGTAAATATG
genomic: TTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatggaagt ... aatggcacagATTACTACTGTCAAGAGAGCAGGAGCAAGGCTTGATTGAACTGTAAATATG
EST: gi|6951767|gb|AW423835.1|AW423835
EST:     TTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATG                         ATTACTACTGTCAAGAGAGCAGGAGCAAGACTTGATTGAACTGTAAATATG
genomic: TTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatggaagt ... aatggcacagATTACTACTGTCAAGAGAGCAGGAGCAAGGCTTGATTGAACTGTAAATATG
EST: gi|6915664|gb|AW397194.1|AW397194
EST:     TTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATG                         ATTACTACTGTCAAGAGAGCAGGAGCAAGGCTTGATTGAACTGTAAATATG
genomic: TTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatggaagt ... aatggcacagATTACTACTGTCAAGAGAGCAGGAGCAAGGCTTGATTGAACTGTAAATATG
EST: gi|254334605|gb|GR844390.1|GR844390
EST:     TTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATG                         ATTACTACTGTCAAGAGAGCAGGAGCAAGGCTTGATTGAACTGTAAATATG
genomic: TTTGAGAACATATATCCAGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatggaagt ... aatggcacagATTACTACTGTCAAGAGAGCAGGAGCAAGGCTTGATTGAACTGTAAATATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagtttatcttgttagttctgatgtctttggaatatttgctattaatggcacagATTACTACTGTCAAGAGAGCAGGAGCAAGGCTTGATTGAACTGTAAATATGAAGACCAGAGATAGAAATATCTGTAATCTGGATTGAGTTTTAATAAGAC
                                         tattaat  putative branch site (score: 2)
                                aatatttgctattaat  TA-rich tract