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...tgattgatcttgaaatgtgaccaggcagggtatgtagcattccaccaaaattgaattaatatggattttagctaataaaggtaactattatctttggcagCATGATTTCAAGGGCAGACATGAATGAAGTTTATGCAGAGTATGCAAGACCTGGTGGTTGGAATG
species | Glycine max |
transcript | GLYMA09G40990.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GATTCATGGGAAAG CATGATTTCAAGGGCAGACACGAATGAAGTTTATGCAGAGTATGCAAGACCEST: gi|208093244|gb|GD893543.1|GD893543
genomic: GATTCATGGGAAAGgtgaacatta ... tctttggcagCATGATTTCAAGGGCAGACATGAATGAAGTTTATGCAGAGTATGCAAGACC
EST: GTGGGAAATAGCTGGAGAACTACCAATGACATTAATGATTCATGGGAAAG CATGATTTCAAGGGCAGACATGAATGAAGTTTATGCAGAGTATGCAAGACCEST: gi|207838375|gb|GD811129.1|GD811129
genomic: GTGGGAAATAGCTGGAGAACTACCAATGACATTAATGATTCATGGGAAAGgtgaacatta ... tctttggcagCATGATTTCAAGGGCAGACATGAATGAAGTTTATGCAGAGTATGCAAGACC
EST: GTGGGAAATAGCTGGAGAACTACCAATGACATTAATGATTCATGGGAAAG CATGATTTCAAGGGCAGACATGAATGAAGTTTATGCAGAGTATGCAAGACCEST: gi|193327671|gb|FK295036.1|FK295036
genomic: GTGGGAAATAGCTGGAGAACTACCAATGACATTAATGATTCATGGGAAAGgtgaacatta ... tctttggcagCATGATTTCAAGGGCAGACATGAATGAAGTTTATGCAGAGTATGCAAGACC
EST: GTGGGAAATAGCTGGAGAACTACCAATGACATTAATGATTCATGGGAAAG CATGATTTCAAGGGCAGACATGAATGAAGTTTATGCAGAGTATGCAAGACCEST: gi|208090698|gb|GD889625.1|GD889625
genomic: GTGGGAAATAGCTGGAGAACTACCAATGACATTAATGATTCATGGGAAAGgtgaacatta ... tctttggcagCATGATTTCAAGGGCAGACATGAATGAAGTTTATGCAGAGTATGCAAGACC
EST: GTGGGAAATAGCTGGNGAACTACCAATGACATTAATGATTCATGGGAAAG CATGATTTCAAGGGCAGACATGAATGAAGTTTATGCAGAGTATGCAAGACCEST: gi|193437777|gb|FK399612.1|FK399612
genomic: GTGGGAAATAGCTGGAGAACTACCAATGACATTAATGATTCATGGGAAAGgtgaacatta ... tctttggcagCATGATTTCAAGGGCAGACATGAATGAAGTTTATGCAGAGTATGCAAGACC
EST: GTGGGAAATAGCTGGAGAACTACCAATGACATTAATGATTCATGGGAAAG CATGATTTCAAGGGCAGACATGAATGEST: gi|193685282|gb|FK625770.1|FK625770
genomic: GTGGGAAATAGCTGGAGAACTACCAATGACATTAATGATTCATGGGAAAGgtgaacatta ... tctttggcagCATGATTTCAAGGGCAGACATGAATG
EST: GTGGGAAATAGCTGGAGAACTACCAATGACATTAATGATTCATGGGAAAG CATGGTTTCAAGGGCAGATATGAATGAAGTTTATGCAGAGTATGCAAGACC
genomic: GTGGGAAATAGCTGGAGAACTACCAATGACATTAATGATTCATGGGAAAGgtgaacatta ... tctttggcagCATGATTTCAAGGGCAGACATGAATGAAGTTTATGCAGAGTATGCAAGACC
caaaattgaattaatatggattttagctaataaaggtaactattatctttggcagCATGATTTCAAGGGCAGACATGAATGAAGTTTATGCAGAGTATGCAAGACCTGGTGGTTGGAATG
aggtaac putative branch site (score: 3)
ttatcttt putative PPT
aattaatatggatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgattgatcttgaaatgtgaccaggcagggtatgtagcattccaccaaaattgaattaatatggattttagctaataaaggtaactattatctttggcagCATGATTTCAAGGGCAGACATGAATGAAGTTTATGCAGAGTATGCAAGACCTGGTGGTTGGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - -tgtgacc
- - - - - - - - - - - -ggcaggg
- - - - - - - - - - - - - - - tatgtag
- - - - - - - - - - - - - - - - - - - -ttccacc