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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatttccaatggctagctgtaaattacagattttttgtccacttccttaattgatgtggggataatatggaaaaagtgtgattaagtagctttttggcctgcagGACTTCTTTAAAAAGCATGGTGTAGCAGTCATGACAATAAGAGAATTGTTTGAATTTATTGTCGATGCATCCATTACTGATGATGCCGTGGATAGTTACC

Basic information

species Glycine max
transcript GLYMA09G39750.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G39750.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv17s0000g01390.t01 (Vitis vinifera), 3'ss of exon 9
--gtga-gtatttccaatggctagctgtaaattacagattttttgtccacttccttaattgatgtggggataatatggaaaaagtgtg------attaagtagctttttggcctgcagGACTTCTTTAAAAAGCATGGTGTAGCAGTCATGACAATAAGAGAATTGTTTGAATTTATTGTCGATGCATCCATTACTGATGATGCCGTGGATAGTTACC
   ||  || | ||  |    |    |    || ||   ||||   | | |     | |   |||    || | |||  | || | |       ||| |     ||  |||| ||||||| || |||||||| ||||||||||| || ||||||||  ||||| ||||||| || || || ||| || |||||||||||||  | ||||||  ||| |
gtatgttgtttctctgagatttcttggctggtttcaatgttttctacaattaaaacagtgactgtaactattaaatgtgacaattatattggtcattgaagcatttggtggcatgcagGATTTTTTTAAAAAACATGGTGTAGCTGTTATGACAATTCGAGAACTGTTTGATTTCATAGTTGATCCAACCATTACTGATGAGTCAGTGGATGATTATC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgatgtggggataatatggaaaaagtgtgattaagtagctttttggcctgcagGACTTCTTTAAAAAGCATGGTGTAGCAGTCATGACAATAAGAGAATTGTTTGAATTTATTGTCGATGCATCCATTACTGATGATGCCGTGGATAGTTACC
 aattgat  putative branch site (score: 4)
                                        cttttt  putative PPT
            ataatatggaaaaa  TA-rich tract