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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgtaactagaatactaggatggaagcattcacggggggttgggggggggggggggttatactttcatatgactttcctcatgaaagtgatttgttgtagATGTTTGATATTGAGAGCAAATGGGGAGCTTTCACTTCTTGACTTGGATGATGGACGGGAGAGAAACCTTACTGATTCAGTTGAACTATTTTGGGTCACC

Basic information

species Glycine max
transcript GLYMA09G39270.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G39270.1 (Glycine max), 3'ss of exon 9
lower sequence: AT3G61480.1 (Arabidopsis thaliana), 3'ss of exon 9
atgtaactagaatactaggatggaagcattcacggggggttgggggggggggggggttatactttcatatgactttcctcatgaaagtgatttgttgtagATGTTTGATATTGAGAGCAAATGGGGAGCTTTCACTTCTTGACTTGGATGATGGACGGGAGAGAAACCTTACTGATTCAGTTGAACTATTTTGGGTCACC
                     | || |||  |  | |  | |            | |||| || ||||   | || |||       ||| | |    ||||||| | ||| |||||| |||||||||||||||||||||||| |||| ||||||||| |||||  | ||||| || |||||||||||||||||||| || 
---------------------gtaatcatcaatagag--tagaatatcctttcagtttatgctgtcattctaattgccttt-----gtggtct-ccatagATGTCTTATACTGAGAGGAAATGGGGAGCTTTCACTTCTTGATTTGGTTGATGGACGAGAGAGGGAACTTACAGACTCAGTTGAACTATTTTGGGTGACA

upper sequence: GLYMA09G39270.1 (Glycine max), 3'ss of exon 9
lower sequence: AT5G28350.2 (Arabidopsis thaliana), 3'ss of exon 9
atgtaactagaatactaggatggaagcattcacggggggttgggggggggggggggttatactttcatatgactttcctcatgaaagtgatttgttgtagATGTTTGATATTGAGAGCAAATGGGGAGCTTTCACTTCTTGACTTGGATGATGGACGGGAGAGAAACCTTACTGATTCAGTTGAACTATTTTGGGTCACC
                     | || |||  |  | |  | |           || |||| || ||||   | || |||  ||    || | |   |||||||| | ||| |||||| |||||||||||||||||||||||| |||| ||||||||| |||||  | ||||| || |||||||||||||||||||| || 
---------------------gtaatcatcaatagag--tagaacatcctttcggtttatgctgtcattctaattgccttttg----tggtct-ccgtagATGTCTTATACTGAGAGGAAATGGGGAGCTTTCACTTCTTGATTTGGTTGATGGACGAGAGAGGGAACTTACAGACTCAGTTGAACTATTTTGGGTGACA

upper sequence: GLYMA09G39270.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 9
atgtaactagaatactaggatggaagcattcacggggggttgggggggggggggggttatactttcatatgactttcctcatgaaagtgatttgttgt-agATGTTTGATATTGAGAGCAAATGGGGAGCTTTCACTTCTTGACTTGGATGATGGACGGGAGAGAAACCTTACTGATTCAGTTGAACTATTTTGGGTCACC
                     | | |   | |       |      |       |    | ||  || |  |   | || |  |     ||   |||  |||||||||||||||||||  ||||||||||||||||| |||||| ||||||||||||| || ||| | || || ||||| |||||| |||||||||| |||
---------------------gtatgttcttatc---cttcaaaatgttaaatagaactttctcacacaacatacttctgactacctgcatgccttgccagATGTTTGATATTGAGAGTGAATGGGGAGCTTTCACTACTTGACCTGGATGATGGACGTGAAAGAGAGCTCACGGATTCTGTTGAATTATTTTGGGTTACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggggggggggttatactttcatatgactttcctcatgaaagtgatttgttgtagATGTTTGATATTGAGAGCAAATGGGGAGCTTTCACTTCTTGACTTGGATGATGGACGGGAGAGAAACCTTACTGATTCAGTTGAACTATTTTGGGTCACC
           ttatactttcatat  TA-rich tract