Sequence
atgc intronic sequence ATGC exonic sequence...atgtaactagaatactaggatggaagcattcacggggggttgggggggggggggggttatactttcatatgactttcctcatgaaagtgatttgttgtagATGTTTGATATTGAGAGCAAATGGGGAGCTTTCACTTCTTGACTTGGATGATGGACGGGAGAGAAACCTTACTGATTCAGTTGAACTATTTTGGGTCACC
Basic information
species | Glycine max |
transcript | GLYMA09G39270.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G39270.1 (Glycine max), 3'ss of exon 9
lower sequence: AT3G61480.1 (Arabidopsis thaliana), 3'ss of exon 9
atgtaactagaatactaggatggaagcattcacggggggttgggggggggggggggttatactttcatatgactttcctcatgaaagtgatttgttgtagATGTTTGATATTGAGAGCAAATGGGGAGCTTTCACTTCTTGACTTGGATGATGGACGGGAGAGAAACCTTACTGATTCAGTTGAACTATTTTGGGTCACC
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---------------------gtaatcatcaatagag--tagaatatcctttcagtttatgctgtcattctaattgccttt-----gtggtct-ccatagATGTCTTATACTGAGAGGAAATGGGGAGCTTTCACTTCTTGATTTGGTTGATGGACGAGAGAGGGAACTTACAGACTCAGTTGAACTATTTTGGGTGACA
upper sequence: GLYMA09G39270.1 (Glycine max), 3'ss of exon 9
lower sequence: AT5G28350.2 (Arabidopsis thaliana), 3'ss of exon 9
atgtaactagaatactaggatggaagcattcacggggggttgggggggggggggggttatactttcatatgactttcctcatgaaagtgatttgttgtagATGTTTGATATTGAGAGCAAATGGGGAGCTTTCACTTCTTGACTTGGATGATGGACGGGAGAGAAACCTTACTGATTCAGTTGAACTATTTTGGGTCACC
| || ||| | | | | | || |||| || |||| | || ||| || || | | |||||||| | ||| |||||| |||||||||||||||||||||||| |||| ||||||||| ||||| | ||||| || |||||||||||||||||||| ||
---------------------gtaatcatcaatagag--tagaacatcctttcggtttatgctgtcattctaattgccttttg----tggtct-ccgtagATGTCTTATACTGAGAGGAAATGGGGAGCTTTCACTTCTTGATTTGGTTGATGGACGAGAGAGGGAACTTACAGACTCAGTTGAACTATTTTGGGTGACA
upper sequence: GLYMA09G39270.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv15s0046g01890.t01 (Vitis vinifera), 3'ss of exon 9
atgtaactagaatactaggatggaagcattcacggggggttgggggggggggggggttatactttcatatgactttcctcatgaaagtgatttgttgt-agATGTTTGATATTGAGAGCAAATGGGGAGCTTTCACTTCTTGACTTGGATGATGGACGGGAGAGAAACCTTACTGATTCAGTTGAACTATTTTGGGTCACC
| | | | | | | | | || || | | | || | | || ||| ||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| || ||| | || || ||||| |||||| |||||||||| |||
---------------------gtatgttcttatc---cttcaaaatgttaaatagaactttctcacacaacatacttctgactacctgcatgccttgccagATGTTTGATATTGAGAGTGAATGGGGAGCTTTCACTACTTGACCTGGATGATGGACGTGAAAGAGAGCTCACGGATTCTGTTGAATTATTTTGGGTTACC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gggggggggggttatactttcatatgactttcctcatgaaagtgatttgttgtagATGTTTGATATTGAGAGCAAATGGGGAGCTTTCACTTCTTGACTTGGATGATGGACGGGAGAGAAACCTTACTGATTCAGTTGAACTATTTTGGGTCACC
ttatactttcatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgtaactagaatactaggatggaagcattcacggggggttgggggggggggggggttatactttcatatgactttcctcatgaaagtgatttgttgtagATGTTTGATATTGAGAGCAAATGGGGAGCTTTCACTTCTTGACTTGGATGATGGACGGGAGAGAAACCTTACTGATTCAGTTGAACTATTTTGGGTCACC
- - - - - - - - -ggatgga
- - - - - - - - - - - - -gcattca
- - - - - - - - - - - - - - - - -ggggggt
- - - - - - - - - - - - - - - - - - - - -ggggggg