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gtatacttataaagaggctttagcgctttcaatgttttatgcttttcaagttgttctttgtgatttgattttaacttgttttgttcattccctacccactttactgcagAAAAGAAGCCAGTGGATGACTTGACACATAGGCCGAATGACTTGCTCTCACTTATCGTTGGTGGAGAAAAAGGGGGGTTGCAGACTTCTAATGTAGAAAC
species | Glycine max |
transcript | GLYMA09G39120.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCCACACGCCTTCCAATCTTCCAAGTTTGCTCATTGGTTTGTTGAAGAAG AAAAGAAGCCAGTGGATGACTTGACACATAGGCCGAATGACTTGCTCTCACEST: gi|193696626|gb|FK636676.1|FK636676
genomic: TCCACACGCCTTCCAATCTTCCAAGTTTGCTCATTGGTTTGTTGAAGAAGgtatacttat ... tttactgcagAAAAGAAGCCAGTGGATGACTTGACACATAGGCCGAATGACTTGCTCTCAC
EST: CCAATCTTCCAAGTTTTGTCTCATTGGTTTGTTGAAGAAG AAAAGAAGCCAGTGGATGACTTGACACATAGGCCGAATGACTTGCTCTCACEST: gi|208189597|gb|GD987725.1|GD987725
genomic: CCAATCTTCCAAG-TTTG-CTCATTGGTTTGTTGAAGAAGgtatacttat ... tttactgcagAAAAGAAGCCAGTGGATGACTTGACACATAGGCCGAATGACTTGCTCTCAC
EST: TCCACACGCCTTCCAATCTTCCAAGTTTGCTCATTGGTTTGTTGAAGAAG AAAAGAAGCCAGTGGATGACTTGACACATAGGCCGAATGACTTGCTEST: gi|193695633|gb|FK633447.1|FK633447
genomic: TCCACACGCCTTCCAATCTTCCAAGTTTGCTCATTGGTTTGTTGAAGAAGgtatacttat ... tttactgcagAAAAGAAGCCAGTGGATGACTTGACACATAGGCCGAATGACTTGCT
EST: TCCACACGCCTTCCAATCTTCCAAGTTTGCTCATTGGTTTGTTGAAGAAG AAAAGAAGCCAGTGGAEST: gi|208268945|gb|GE068134.1|GE068134
genomic: TCCACACGCCTTCCAATCTTCCAAGTTTGCTCATTGGTTTGTTGAAGAAGgtatacttat ... tttactgcagAAAAGAAGCCAGTGGA
EST: TCCACACGCCTTCCAATCTTCCAAGTTTGCTCATTGGTTTGTTGAAGAAG AAAAGAAGCCAGTGGATGACTTGACACATAGGCCGAATGACTTGCTEST: gi|193563081|gb|FK519514.1|FK519514
genomic: TCCACACGCCTTCCAATCTTCCAAGTTTGCTCATTGGTTTGTTGAAGAAGgtatacttat ... tttactgcagAAAAGAAGCCAGTGGATGACTTGACACATAGGCCGAATGACTTGCT
EST: CCAATCTTCCAAGTTTGCTCATTGGTTTGTTGAAGAAG AAAAGAAGCCAGTGGATGACTTGACACATAGGCCGAATGACTTGCTCTCAC
genomic: CCAATCTTCCAAGTTTGCTCATTGGTTTGTTGAAGAAGgtatacttat ... tttactgcagAAAAGAAGCCAGTGGATGACTTGACACATAGGCCGAATGACTTGCTCTCAC
tctttgtgatttgattttaacttgttttgttcattccctacccactttactgcagAAAAGAAGCCAGTGGATGACTTGACACATAGGCCGAATGACTTGCTCTCACTTATCGTTGGTGGAGAAAAAGGGGGGTTGCAGACTTCTAATGTAGAAAC
ttttaac putative branch site (score: 2)
ttccctacccacttt putative PPT
atttgattttaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatacttataaagaggctttagcgctttcaatgttttatgcttttcaagttgttctttgtgatttgattttaacttgttttgttcattccctacccactttactgcagAAAAGAAGCCAGTGGATGACTTGACACATAGGCCGAATGACTTGCTCTCACTTATCGTTGGTGGAGAAAAAGGGGGGTTGCAGACTTCTAATGTAGAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA