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...tagttagaaatttttggggaaataatgccatatatcaatatattgtcctgctgcttttgtatgttttgctttaatattttgatttgtattattattacagTGATCGCCGTTTAGCTGATCATTTTGGAGGCAAACTTCATTTAGGGTATATGCAGATTCGTGAGAAGTTAGCCGAACTTCAA
species | Glycine max |
transcript | GLYMA09G38430.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AAGCTACGTGTGTGCGACATTTGTGGAGCANTTTTGAGTGTGTATGACAG TGATCGCCGTTTAGCTGATCATTTTGGATGCAAACTTCATTTANGGTATATEST: gi|254336538|gb|GR842717.1|GR842717
genomic: AAGCTACGTGTGTGCGACATTTGTGGAGCATTTTTGAGTGTTTATGACAGgtaacaactg ... attattacagTGATCGCCGTTTAGCTGATCATTTTGGAGGCAAACTTCATTTAGGGTATAT
EST: AAGCTACGTGTGTGCGACATTTGTGGAGCATTTTTGAGTGTTTATGACAG TGATCGCCGTTTAGCTGATCATTTTGGAGGCAAACTTCATTTAGGGTATATEST: gi|254336539|gb|GR842718.1|GR842718
genomic: AAGCTACGTGTGTGCGACATTTGTGGAGCATTTTTGAGTGTTTATGACAGgtaacaactg ... attattacagTGATCGCCGTTTAGCTGATCATTTTGGAGGCAAACTTCATTTAGGGTATAT
EST: AAGCTACGTGTGTGCGACATTTGTGGAGCATTTTTGAGTGTTTATGACAG TGATCGCCGTTTAGCTGATCATTTGGGAGGCAAACTTCATTTAGGGTATATEST: gi|208146329|gb|GD946208.1|GD946208
genomic: AAGCTACGTGTGTGCGACATTTGTGGAGCATTTTTGAGTGTTTATGACAGgtaacaactg ... attattacagTGATCGCCGTTTAGCTGATCATTTTGGAGGCAAACTTCATTTAGGGTATAT
EST: AAGCTACGTGTGTGCGACATTTGTGGAGCATTTTTGAGTGTTTATGACAG TGATCGCCGTTTAGCTGATCATTTTGGAGGCAAACTTCATTTAGGGTATATEST: gi|16343424|gb|BI969019.1|BI969019
genomic: AAGCTACGTGTGTGCGACATTTGTGGAGCATTTTTGAGTGTTTATGACAGgtaacaactg ... attattacagTGATCGCCGTTTAGCTGATCATTTTGGAGGCAAACTTCATTTAGGGTATAT
EST: AAGCTACGTGTGTGCGACATTTGTGGAGCATTNNNGAGTGTTTATGACAG TGATCGCCGTTTAGCTGATCATTTTGGAGGCAAACTTCANNNAGGGTATAT
genomic: AAGCTACGTGTGTGCGACATTTGTGGAGCATTTTTGAGTGTTTATGACAGgtaacaactg ... attattacagTGATCGCCGTTTAGCTGATCATTTTGGAGGCAAACTTCATTTAGGGTATAT
tcctgctgcttttgtatgttttgctttaatattttgatttgtattattattacagTGATCGCCGTTTAGCTGATCATTTTGGAGGCAAACTTCATTTAGGGTATATGCAGATTCGTGAGAAGTTAGCCGAACTTCAA
ttttgat putative branch site (score: 4)
tatgttttgctttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagttagaaatttttggggaaataatgccatatatcaatatattgtcctgctgcttttgtatgttttgctttaatattttgatttgtattattattacagTGATCGCCGTTTAGCTGATCATTTTGGAGGCAAACTTCATTTAGGGTATATGCAGATTCGTGAGAAGTTAGCCGAACTTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - tttgggg
- - - - - - - - - - - -aatgcca
- - - - - - - - - - - - - - - - - - - - - - - -ctgctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatttg