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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgcttattgtttgtactatttaaatccttcacaaggcatggtgcctcatgctgtgtagttatacagaatatgcacttttcatgacagatattagtcattgtgatgctttgtattctttggttttttttcagATTTTAGCTGCATGTTCGGGTATAACACGGGCATATTGTCCATTGTTGCTTTTCATTGATCCAAATCACCAATACTTTTCTGTTATTTTTCTGCGTATAA

Basic information

species Glycine max
transcript GLYMA09G36540.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33389001|gb|CA852208.1|CA852208
EST:     TATGATTATACCATGGACTTTGATCTTGGTAGCTCCAGCCATTGACTAAG                         ATTTTAGCTGCATGTTCGGGTATAACACGGGCATATTGTCCATTGTTGCTT
genomic: TATGATTATACCATGGACTTTGATCTTGGTAGCTCCAGCCATTGACTAAGgtaattgctt ... tttttttcagATTTTAGCTGCATGTTCGGGTATAACACGGGCATATTGTCCATTGTTGCTT
EST: gi|193417780|gb|FK383374.1|FK383374
EST:     TTTGATCTTGGTAGCTCCAGCCATTGACTGAG                         ATTTTAGCTGCATGTTCGGGTATAACACGGGCATATTGTCCATTGTTGCTT
genomic: TTTGATCTTGGTAGCTCCAGCCATTGACTAAGgtaattgctt ... tttttttcagATTTTAGCTGCATGTTCGGGTATAACACGGGCATATTGTCCATTGTTGCTT
EST: gi|23735263|gb|BU765904.1|BU765904
EST:     TATGATTATACCATGGACTTTGATCTTGGTAGCTCCAGCCATTGACTAAG                         ATTTTAGCTGCATGTTCGGGTATAACACGGGCATATTGTCCATTGTTGCTT
genomic: TATGATTATACCATGGACTTTGATCTTGGTAGCTCCAGCCATTGACTAAGgtaattgctt ... tttttttcagATTTTAGCTGCATGTTCGGGTATAACACGGGCATATTGTCCATTGTTGCTT
EST: gi|21888310|gb|BQ741523.1|BQ741523
EST:     TATGATTATACCATGGACTTTGATCTTGGTAGCTCCAGCCATTGACTAAG                         ATTTTAGCTGCATGTTCGGGTATAACACGGGCATATTGTCCATTGTTGCTT
genomic: TATGATTATACCATGGACTTTGATCTTGGTAGCTCCAGCCATTGACTAAGgtaattgctt ... tttttttcagATTTTAGCTGCATGTTCGGGTATAACACGGGCATATTGTCCATTGTTGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcatgacagatattagtcattgtgatgctttgtattctttggttttttttcagATTTTAGCTGCATGTTCGGGTATAACACGGGCATATTGTCCATTGTTGCTTTTCATTGATCCAAATCACCAATACTTTTCTGTTATTTTTCTGCGTATAA
                                    ttctttggtttttttt  CT-rich tract
                                            ttttttttca  TA-rich tract