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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagctagttcgaatgtttatgttgctgaggctctgttgcatgttgtcttcaaggtggatcggtctgctgtttagtttgttaaattttgatgtcggtttggccttttttgttcaacatttacagGAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAATTATCACCACCACCACCATGACGGCCATCACCATCAATCTTCAATACTAT

Basic information

species Glycine max
transcript GLYMA09G35980.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193475007|gb|FK441648.1|FK441648
EST:     TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAG                         GAAGTTAAAGATGAC
genomic: TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTTAAAGATGAC
EST: gi|24206180|gb|BU965433.1|BU965433
EST:     TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAG                         GAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
genomic: TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
EST: gi|10237801|gb|BE806689.1|BE806689
EST:     TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAG                         GAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
genomic: TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
EST: gi|208211468|gb|GE009547.1|GE009547
EST:     TGTTCGCGAGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAG                         GAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
genomic: TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
EST: gi|15204544|gb|BI427312.1|BI427312
EST:     TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAG                         GAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
genomic: TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
EST: gi|15285708|gb|BI469599.1|BI469599
EST:     TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAG                         GAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
genomic: TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
EST: gi|19348704|gb|BM893236.1|BM893236
EST:     TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAG                         GAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
genomic: TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
EST: gi|19935308|gb|BQ080338.1|BQ080338
EST:     TTGGCATTTAGTTTCCTGATGTTCAG                         GAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
genomic: TTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
EST: gi|193519758|gb|FK476279.1|FK476279
EST:     TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAG                         GAAGTTAAAGATGACCAAACAAACCCGGACA
genomic: TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTTAAAGATGACCAAACAAACCCGGACA
EST: gi|14259863|gb|BG882771.1|BG882771
EST:     TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAG                         GAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT
genomic: TGTTCGCGGGCACCGGTGGACCAATTGGCATTTAGTTTCCTGATGTTCAGgtaaagctag ... acatttacagGAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttagtttgttaaattttgatgtcggtttggccttttttgttcaacatttacagGAAGTTAAAGATGACCAAACAAACCCGGACAGATATGTAGAGAATCACAATTATCACCACCACCACCATGACGGCCATCACCATCAATCTTCAATACTAT
               ttttgat  putative branch site (score: 4)
      tttgttaaattttgat  TA-rich tract