1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...catttcactaaacaatagcaagtgttgtgcttgggaataatccatgttatatattatttttctgctgcaagagtattgacatgttgaatctattatgcagGTTGATAAGAATCTTTCTTTCCTCAATGGGTATGTTCAGCAGTCTTTAGAAAGAGGTGCTGAATCCTATATTCCTGAGGATGTGCGTGCTGGAATGGGGA
species | Glycine max |
transcript | GLYMA09G35240.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AAGCTGTTGAAACAATAATGCCACGAGATGCAAGTTGTGAAGACATTGAG GTTGATAAGAATCTTTCTTTCCTCAATGGGTATGTTCAGCAGTCTTTAGAAEST: gi|9901369|gb|BE610337.1|BE610337
genomic: AAGCTGTTGAAACAATAATGCCACGAGATGCAAGTTGTGAAGACATTGAGgttattgcta ... tattatgcagGTTGATAAGAATCTTTCTTTCCTCAATGGGTATGTTCAGCAGTCTTTAGAA
EST: AAGCTGTTGAAACAATAATGCCACGAGATGCAAGTTGTGAAGACATTGAG GTTGATAAGAATCTTTCTTTCCTCAATGGGTATGTTCAGCAGTCTTTAGAAEST: gi|213608293|gb|DB972635.1|DB972635
genomic: AAGCTGTTGAAACAATAATGCCACGAGATGCAAGTTGTGAAGACATTGAGgttattgcta ... tattatgcagGTTGATAAGAATCTTTCTTTCCTCAATGGGTATGTTCAGCAGTCTTTAGAA
EST: AAGCTGTTGAAACAATAATGCCACGAGATGCAAGTTGTGAAGACATTGAG GTTGATAAGAATCTTTCTTTCCTCAATGGGTATGTTCAGCAGTCTTTAGAAEST: gi|254346448|gb|GR856170.1|GR856170
genomic: AAGCTGTTGAAACAATAATGCCACGAGATGCAAGTTGTGAAGACATTGAGgttattgcta ... tattatgcagGTTGATAAGAATCTTTCTTTCCTCAATGGGTATGTTCAGCAGTCTTTAGAA
EST: AAGCTGTTGAAACAATAATGCCACGAGATGCAAGTTGTGAAGACATTGAG GTTGATAAGAATCTTTCTTTCCTCAATGGGTATGTTCAGCAGTCTTTAGAA
genomic: AAGCTGTTGAAACAATAATGCCACGAGATGCAAGTTGTGAAGACATTGAGgttattgcta ... tattatgcagGTTGATAAGAATCTTTCTTTCCTCAATGGGTATGTTCAGCAGTCTTTAGAA
gttatatattatttttctgctgcaagagtattgacatgttgaatctattatgcagGTTGATAAGAATCTTTCTTTCCTCAATGGGTATGTTCAGCAGTCTTTAGAAAGAGGTGCTGAATCCTATATTCCTGAGGATGTGCGTGCTGGAATGGGGA
tattgac putative branch site (score: 2)
atattatttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catttcactaaacaatagcaagtgttgtgcttgggaataatccatgttatatattatttttctgctgcaagagtattgacatgttgaatctattatgcagGTTGATAAGAATCTTTCTTTCCTCAATGGGTATGTTCAGCAGTCTTTAGAAAGAGGTGCTGAATCCTATATTCCTGAGGATGTGCGTGCTGGAATGGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - -ctaaaca
- - - - - - - - -gcaagtg
- - - - - - - - - - - - - -tgcttgg
- - - - - - - - - - - - - - - - - - - - -ccatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacatg