Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtttatgaattagttttatctttctacctttgcaacttcttctttcgtgttactaatatctctgatttctgaacaatcttgtagTGCTTTTTCCCACAATATTTGGTGTCACGTATCACTACACCAATCTTCTTTGTAAACGCGGCTTACGACTCATGGCAG

Basic information

species Glycine max
transcript GLYMA09G35050.4
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10709683|gb|BF009407.1|BF009407
EST:     CTGCTAGGAATTTGCCTCAATCGTGCACTTCAAGACTTAGCCCAAGGCTG                         TGCTTTTTCCCACAATATTTGGTGTCACGTATCACTACACCAATCTTCTTT
genomic: CTGCTAGGAATTTGCCTCAATCGTGCACTTCAAGACTTAGCCCAAGGCTGgtaggtttat ... aatcttgtagTGCTTTTTCCCACAATATTTGGTGTCACGTATCACTACACCAATCTTCTTT
EST: gi|9898765|gb|BE607733.1|BE607733
EST:     TGCTAG-AATTTGCCTCAATCGTGCACTTCAAGACTTAGCCCCAAGG-TG                         TGCCTTTTCCCACA-TATGTGG-GTCACGTATCACTACA
genomic: TGCTAGGAATTTGCCTCAATCGTGCACTTCAAGACTTAGCCC-AAGGCTGgtaggtttat ... aatcttgtagTGCTTTTTCCCACAATATTTGGTGTCACGTATCACTACA
EST: gi|37995321|gb|CF806910.1|CF806910
EST:     CTGCTAGGAATTTGCCTCAATCGTGCACTTCAAGACTTAGCCCAAGGCTG                         TGCTTTTTCCCACAATATTTGGTGTCACGTATCACTACACCAATCTTCTTT
genomic: CTGCTAGGAATTTGCCTCAATCGTGCACTTCAAGACTTAGCCCAAGGCTGgtaggtttat ... aatcttgtagTGCTTTTTCCCACAATATTTGGTGTCACGTATCACTACACCAATCTTCTTT
EST: gi|7589608|gb|AW705379.1|AW705379
EST:     CTGCTAGGAATTTGCCTCAATCGTGCACTTCAAGACTTAGCCCAAGGCTG                         TGCTTTTTCCCACAATATTTGGTGTCACGTATCACTACACCAATCTTCTTT
genomic: CTGCTAGGAATTTGCCTCAATCGTGCACTTCAAGACTTAGCCCAAGGCTGgtaggtttat ... aatcttgtagTGCTTTTTCCCACAATATTTGGTGTCACGTATCACTACACCAATCTTCTTT
EST: gi|33389751|gb|CA852958.1|CA852958
EST:     CTGCTAGGAATTTGCCTCAATCGTGCACTTCAAGACTTAGCCCAAGGCTG                         TGCTTTTTCCCACAATATTTGGTGTCACGTATCACTACACCAATCTTCTTT
genomic: CTGCTAGGAATTTGCCTCAATCGTGCACTTCAAGACTTAGCCCAAGGCTGgtaggtttat ... aatcttgtagTGCTTTTTCCCACAATATTTGGTGTCACGTATCACTACACCAATCTTCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgcaacttcttctttcgtgttactaatatctctgatttctgaacaatcttgtagTGCTTTTTCCCACAATATTTGGTGTCACGTATCACTACACCAATCTTCTTTGTAAACGCGGCTTACGACTCATGGCAG
                    ttactaatat  TA-rich tract