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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtgcaaaccctttacaattcaatattcaactcttaatccattgcattttttaacggttaactgatgaatatccactttcttttttcttttttgtcagATGGATGCTCTTTCCAATGGGAACTCATTGAATGAAGTGGCTCATATTGCAAATGGCTCACATCCAGGAAACTGCATTTCTCTTCTTCGCATAAAT

Basic information

species Glycine max
transcript GLYMA09G34070.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G34070.1 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os10g42490.1 (Oryza sativa), 3'ss of exon 10
--gtagtgcaaaccctttacaattcaatattcaactcttaatcc--attgc-attttttaacggttaactgatgaatatccactttcttttttcttttttgtcagATGGATGCTCTTTCCAATGGGAACTCATTGAATGAAGTGGCTCATATTGCAAATGGCTCACATCCAGGAAACTGCATTTCTCTTCTTCGCATAAAT
    | || | | || | | |||   ||| |||   | || |    ||||   || || | |   ||| |  |     ||   ||| ||  ||    |||  ||| | ||   | | || || ||   |||  |  |||| ||||| |||||||||||||| ||||||||| | || ||||| |||||||||||||| || 
gtacaatgaagagccat-ataat---atactcagtccatactgaaaattgttgttgttcaccttataattcgttgtggtcatgtttgttaatttgccttttgcagCTTGAGATTTTGTCAAACGGCGGCTCCCTTCATGAGGTGGCACATATTGCAAATGGATCACATCCAAGGAATTGCATCTCTCTTCTTCGCATTAAC

upper sequence: GLYMA09G34070.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G123140_T02 (Zea mays), 3'ss of exon 8
gtagtgcaaaccctttacaattc--aatattcaac------tcttaatccattgcatttttt--aacggttaactgatgaatatccactttctt--ttttcttttttgtcagATGGATGCTCTTTCCAATGGGAACTCATTGAATGAAGTGGCTCATATTGCAAATGGCTCACATCCAGGAAACTGCATTTCTCTTCTTCGCATAAAT
||| | |  |   ||||| |||   || || || |      | ||  | | |||  | | ||  |||        ||| | ||    |||  |   | || |  |||  ||| | ||   | | || |  |||  |||| |  | |||||||| |||||||||||||| ||||| |||   || ||||||||||||||| | || |||
gtactacctata-tttacgatttcaaacatgcatcgcatcgttttggttctttgtttctgttgcaacaagCTTGAGATTAGTAGTGTCTTCATGGATGTTTTAATTTTGCAGCTTGAGATTATGTCAAGCGGGGGCTCACTTCACGAAGTGGCACATATTGCAAATGGATCACACCCAAAGAATTGCATTTCTCTTCTTAGAATCAAT

upper sequence: GLYMA09G34070.1 (Glycine max), 3'ss of exon 9
lower sequence: AT5G46880.1 (Arabidopsis thaliana), 3'ss of exon 8
gtagtgcaaaccctttacaattcaatattcaactcttaatccattgcattttttaacggttaactgatgaatatccactttcttttttcttttttgtcagATGGATGCTCTTTCCAATGGGAACTCATTGAATGAAGTGGCTCATATTGCAAATGGCTCACATCCAGGAAACTGCATTTCTCTTCTTCGCATAAAT
                  ||   || | |  | ||||    |  ||   || || | |   ||    | |      | |||    ||| ||   || ||| | || | | | | |||||| || |||    ||||||| |||||||| |||||||| |||||||| ||||| ||||| ||||||||||| || |||
----------------gtaaacaaaaactagagtctt--ctctctg---ttcttgatgccaaaaccctaag-----atttttcgattttttccctg-cagCTAGAGGTTTTGTTCAATGGTAATTCACCTCATGAAGTTGCTCATATCGCAAATGGTTCACATCCTGGAAATTGCATCTCTCTTCTTCGAATCAAT

upper sequence: GLYMA09G34070.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv02s0012g02030.t01 (Vitis vinifera), 3'ss of exon 9
gtagtgcaaaccctttacaattcaatattcaactcttaatccattgcattttttaacggtta-actgatgaatatccactttcttttttcttttttgtcagATGGATGCTCTTTCCAATGGGAACTCATTGAATGAAGTGGCTCATATTGCAAATGGCTCACATCCAGGAAACTGCATTTCTCTTCTTCGCATAAAT
   ||   |  |    | |||||    ||||| ||||    ||   ||  |  |||     | ||| | || ||   |   |   || | ||||    ||| | |||| ||||||||||||||| || ||  |||||||||| || ||||| |||||||| |||||||||||||||||||||||||||||||| |||
---gtttgattcagacataattct---ttcaaatctt----caagacacatcctaaaacccatactcaagactaaaaatgataacttgtattttg---cagCTTGATGTTCTTTCCAATGGGAATTCCTTACATGAAGTGGCACACATTGCCAATGGCTCTCATCCAGGAAACTGCATTTCTCTTCTTCGCATCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcattttttaacggttaactgatgaatatccactttcttttttcttttttgtcagATGGATGCTCTTTCCAATGGGAACTCATTGAATGAAGTGGCTCATATTGCAAATGGCTCACATCCAGGAAACTGCATTTCTCTTCTTCGCATAAAT
                          tatccactttcttttt  CT-rich tract
                                 tttcttttttcttttt  TA-rich tract