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gtattcctgaacaaattttatttgacattttggcatacttttggcttttatactatctatcaagttctgttttcatgattttggcatgttgttctagtcttcaaaaatttatgtaaattcatggcatgagccaaacagcaaccctaatttttctaacttatttgaagGTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTGCAAAGTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGA
species | Glycine max |
transcript | GLYMA09G33480.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGATCTTCTTCAGGAAGGGGGTAAAAGAAATTAACGAAAAAGGAGAAGAG GTGATGTATGACTATGAAGACAAAATCAATAEST: gi|207790890|gb|GD759675.1|GD759675
genomic: TGATCTTCTTCAGGAAGGGGGTAAAAGAAATTAACGAAAAAGGAGAAGAGgtattcctga ... ttatttgaagGTGATGTATGACTATGAAGACAAAATCAATA
EST: TGATCTTCTTCAGGAAGGGGGTAAAAGAAATTAACG-AAAAGGAGAAGAG GTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTGEST: gi|208213209|gb|GE010574.1|GE010574
genomic: TGATCTTCTTCAGGAAGGGGGTAAAAGAAATTAACGAAAAAGGAGAAGAGgtattcctga ... ttatttgaagGTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTG
EST: TGATCTTCTTCAGGAAGGGGGTAAAAGAAATTAACGAAAAAGGAGAAGAG GTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTGEST: gi|207682760|gb|GD666377.1|GD666377
genomic: TGATCTTCTTCAGGAAGGGGGTAAAAGAAATTAACGAAAAAGGAGAAGAGgtattcctga ... ttatttgaagGTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTG
EST: GGGGGTAAAAGAAATTAACG-AAAAGGAGAAGAG GTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTGEST: gi|208135490|gb|GD934515.1|GD934515
genomic: GGGGGTAAAAGAAATTAACGAAAAAGGAGAAGAGgtattcctga ... ttatttgaagGTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTG
EST: TAAAAGAAATTAACGAAAAAGGAGAAGAG GTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTGEST: gi|208243471|gb|GE042021.1|GE042021
genomic: TAAAAGAAATTAACGAAAAAGGAGAAGAGgtattcctga ... ttatttgaagGTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTG
EST: TGATCTTCTTCAGGAAGGGGGTAAAAGAAATTAACG-AAAAGGAGAAGAG GTGATGTATGACTATGAAGACGAAATCAATAGAGCTGTGTTTCCTGGACTGEST: gi|193343919|gb|FK313219.1|FK313219
genomic: TGATCTTCTTCAGGAAGGGGGTAAAAGAAATTAACGAAAAAGGAGAAGAGgtattcctga ... ttatttgaagGTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTG
EST: TGATCTTCTTCAGGAAGGGGGTAAAAGAAATTAACG-AAAAGGAGAAGAG GTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTGEST: gi|207847349|gb|GD820390.1|GD820390
genomic: TGATCTTCTTCAGGAAGGGGGTAAAAGAAATTAACGAAAAAGGAGAAGAGgtattcctga ... ttatttgaagGTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTG
EST: GGGGGTAAAAGAAATTAACGAAAAAGGAGAAGAG GTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTGEST: gi|16346437|gb|BI972032.1|BI972032
genomic: GGGGGTAAAAGAAATTAACGAAAAAGGAGAAGAGgtattcctga ... ttatttgaagGTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTG
EST: TGATCTTCTTCAGGAAGGGGGTAAAAGAAATTAACGAAAAAGGAGAAGAG GTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTGEST: gi|193535272|gb|FK489968.1|FK489968
genomic: TGATCTTCTTCAGGAAGGGGGTAAAAGAAATTAACGAAAAAGGAGAAGAGgtattcctga ... ttatttgaagGTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTG
EST: TGATCTTCTTCAGGAAGGGGGTAAAAGAAATTAACGAAAAAGGAGAAGAG GTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTGEST: gi|193455234|gb|FK419239.1|FK419239
genomic: TGATCTTCTTCAGGAAGGGGGTAAAAGAAATTAACGAAAAAGGAGAAGAGgtattcctga ... ttatttgaagGTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTG
EST: AAATTAACGAAAAAGGAGAAGAG GTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTGEST: gi|207775539|gb|GD746886.1|GD746886
genomic: AAATTAACGAAAAAGGAGAAGAGgtattcctga ... ttatttgaagGTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTG
EST: GGGGGTAAAAGAAATTAACGAAAAAGGAGAAGAG GTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTGEST: gi|208135227|gb|GD937878.1|GD937878
genomic: GGGGGTAAAAGAAATTAACGAAAAAGGAGAAGAGgtattcctga ... ttatttgaagGTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTG
EST: TGATCTTCTTCAGGAAGGGGGTAAAAGAAATTAACGAAAAAGGAGAAGAG GTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTGEST: gi|193562546|gb|FK519077.1|FK519077
genomic: TGATCTTCTTCAGGAAGGGGGTAAAAGAAATTAACGAAAAAGGAGAAGAGgtattcctga ... ttatttgaagGTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTG
EST: AAGGGGGTAAAAGAAATTAACGAAAAAGGAGAAGAG GTGATGTATGACTATGAAGACAAAATCAGTAGAGCTGTGTTTCCTGGACTGEST: gi|193328097|gb|FK296904.1|FK296904
genomic: AAGGGGGTAAAAGAAATTAACGAAAAAGGAGAAGAGgtattcctga ... ttatttgaagGTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTG
EST: TGATCTTCTTCAGGAAGGGG-TAAAAGAAATTAACGAAAAAGGAGAAGAG GTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTGEST: gi|208310108|gb|GE109374.1|GE109374
genomic: TGATCTTCTTCAGGAAGGGGGTAAAAGAAATTAACGAAAAAGGAGAAGAGgtattcctga ... ttatttgaagGTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTG
EST: TGATCTTCTTCAGGAAGGGGGTAAAAGAAATTAACGAAAA-GGAGAAGAG GTGATGTATGACTATGAAGACAAAATEST: gi|16348582|gb|BI974177.1|BI974177
genomic: TGATCTTCTTCAGGAAGGGGGTAAAAGAAATTAACGAAAAAGGAGAAGAGgtattcctga ... ttatttgaagGTGATGTATGACTATGAAGACAAAAT
EST: TGATCTTCTTCAGGAAGGGGGTAAAAGAAATTAACGAAAAAGGAGAAGAG GTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTG
genomic: TGATCTTCTTCAGGAAGGGGGTAAAAGAAATTAACGAAAAAGGAGAAGAGgtattcctga ... ttatttgaagGTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTG
gtaaattcatggcatgagccaaacagcaaccctaatttttctaacttatttgaagGTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTGCAAAGTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGA
ttctaac putative branch site (score: 1)
cttattt CT-rich tract
taatttttctaactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcctgaacaaattttatttgacattttggcatacttttggcttttatactatctatcaagttctgttttcatgattttggcatgttgttctagtcttcaaaaatttatgtaaattcatggcatgagccaaacagcaaccctaatttttctaacttatttgaagGTGATGTATGACTATGAAGACAAAATCAATAGAGCTGTGTTTCCTGGACTGCAAAGTGGTCCTCACTTCCACTCTATTACTGGTTTAGCTGTTGCATTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT