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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgttaattgtgatgactttcgagggattgcttgactgatcgaatgatacacaactacattgattttttcttttttgtcatttacagACCATAGCATGAACAAGGAGAACAACAATTCAAGGGCAATTGGAGATCATTCATCGGCTACTATTAGTTCACCACCTATCAGTTCTCAGTTGCGGGATCT

Basic information

species Glycine max
transcript GLYMA09G25160.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58020188|gb|CX706930.1|CX706930
EST:     TCCTTATGCTAGTAATTACTCTGAAGCATTGTCAAAAATAGTTCAGGAAG                         ACCATAGCATGAACAAGGAGAACAACAATTCAAGGGCAATTGGAGATCATT
genomic: TCCTTATGCTAGTAATTACTCTGAAGCATTGTCAAAAATAGTTCAGGAAGgttcgttaat ... tcatttacagACCATAGCATGAACAAGGAGAACAACAATTCAAGGGCAATTGGAGATCATT
EST: gi|58023814|gb|CX710555.1|CX710555
EST:     TCCTTATGCTAGTAATTACTCTGAAGCATTGTCAAAAATAGTTCAGGAAG                         ACCATAGCATGAACAAGGAGAACAACAATTCAAGGGCAATTGGAGATCATT
genomic: TCCTTATGCTAGTAATTACTCTGAAGCATTGTCAAAAATAGTTCAGGAAGgttcgttaat ... tcatttacagACCATAGCATGAACAAGGAGAACAACAATTCAAGGGCAATTGGAGATCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgactgatcgaatgatacacaactacattgattttttcttttttgtcatttacagACCATAGCATGAACAAGGAGAACAACAATTCAAGGGCAATTGGAGATCATTCATCGGCTACTATTAGTTCACCACCTATCAGTTCTCAGTTGCGGGATCT
                               ttttttcttttttgtc  CT-rich tract
                              attttttcttttttgt  TA-rich tract