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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggaccctgaaccttttgatatctagagataagattagtgtatatatgttgcatttttatgtgctgctataatttaaaaacagggacatatacaaacaaaatgctttaaactttgaaccatcactcattcctgtttcgagataagtcattaaaagtttttgtcacacttatgtgttgatcttttatattttagGAAGATAATATTTTGAATGGGATAGCATGGGATGGTGAGCAAAAGCGTATCTTCG

Basic information

species Glycine max
transcript GLYMA09G24450.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26268204|gb|CA819267.1|CA819267
EST:     GGGGCGATTAGT                         GAAGATCATATTTTGAATGGGATAGCATGGGATGGTGAGCAAAAGCGTATC
genomic: GGGGCGATTAGTgtaaggaccc ... tatattttagGAAGATAATATTTTGAATGGGATAGCATGGGATGGTGAGCAAAAGCGTATC
EST: gi|151393930|gb|EV263801.1|EV263801
EST:     GAAAGAACTTGTTGAAGCAGGGGCGATTAGT                         GAAGATAATATTTTGAATGGGATAGCATGGGATGGTGAGCAAAAGCGTATC
genomic: GAAAGAACTTGTTGAAGCAGGGGCGATTAGTgtaaggaccc ... tatattttagGAAGATAATATTTTGAATGGGATAGCATGGGATGGTGAGCAAAAGCGTATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agataagtcattaaaagtttttgtcacacttatgtgttgatcttttatattttagGAAGATAATATTTTGAATGGGATAGCATGGGATGGTGAGCAAAAGCGTATCTTCG
                                  tgttgat  putative branch site (score: 4)
                                        tcttttat  CT-rich tract
                                    ttgatcttttatattt  TA-rich tract