1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ctaacatttatcaataaaaaaattataaaggccttaacttcttgaacttcattgtgagtaaaaatcaaatgagtattactaattactttctccttttcagGCAATTCTAGCTTGTTCCTTTGCTGAGAAAGACTATGAAAAGGTGCTTGTTGCAGCAACACGAACTCTCCAGATGAGTTTTGTTTTAGGAGTTGGATTGT
species | Glycine max |
transcript | GLYMA09G15550.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGTGGCTCACATCTTCCCTTCTTGCTGATGGATTGGCTGTTGCTGTACAG GCAATTCTAGCTTGTTCCTTTGCTGAGAAAGACTATGAAAAGGTGCTTGTTEST: gi|193570060|gb|FK525803.1|FK525803
genomic: TGTGGCTCACATCTTCCCTTCTTGCTGATGGATTGGCTGTTGCTGTACAGgtacaaaaca ... tccttttcagGCAATTCTAGCTTGTTCCTTTGCTGAGAAAGACTATGAAAAGGTGCTTGTT
EST: GTGGCTCACATCTTCCCTTCTTGCTGATGGATTGGCTGTTGCTTGTACAG GCAATTCTAGCTTGTTCCTTTGCTGAGAAAGACTATGAAAAAGGTGCTTGEST: gi|298168058|gb|HO013321.1|HO013321
genomic: GTGGCTCACATCTTCCCTTCTTGCTGATGGATTGGCTGTTGCT-GTACAGgtacaaaaca ... tccttttcagGCAATTCTAGCTTGTTCCTTTGCTGAGAAAGACTATGAAAA-GGTGCTTG
EST: TGTGGCTCACATCTTCCCTTCTTGCTGATGGATTGGCTGTTGCTGTACAG GCAATTCTAGCTTGTTCCTTTGCTGAGAAAGACTATGAAAAGGTGCTTGTTEST: gi|208075398|gb|GD875937.1|GD875937
genomic: TGTGGCTCACATCTTCCCTTCTTGCTGATGGATTGGCTGTTGCTGTACAGgtacaaaaca ... tccttttcagGCAATTCTAGCTTGTTCCTTTGCTGAGAAAGACTATGAAAAGGTGCTTGTT
EST: TGTGGCTCACGTCTTCCCTTCTTGCTGATGGATTGGCTGTTGCTGTACAG GCAATTCTAGCTTGTTCCTTTGCTGAGAAAGACTATGAAAAGGTGCTTGTTEST: gi|207801118|gb|GD774149.1|GD774149
genomic: TGTGGCTCACATCTTCCCTTCTTGCTGATGGATTGGCTGTTGCTGTACAGgtacaaaaca ... tccttttcagGCAATTCTAGCTTGTTCCTTTGCTGAGAAAGACTATGAAAAGGTGCTTGTT
EST: TGTGGCTCACATCTTCCCTTCTTGCTGATGGATTGGCTGTTGCTGTACAG GCAATTCTAGCTTGTTCCTTTGCTGAGAAAGACTA
genomic: TGTGGCTCACATCTTCCCTTCTTGCTGATGGATTGGCTGTTGCTGTACAGgtacaaaaca ... tccttttcagGCAATTCTAGCTTGTTCCTTTGCTGAGAAAGACTA
acttcattgtgagtaaaaatcaaatgagtattactaattactttctccttttcagGCAATTCTAGCTTGTTCCTTTGCTGAGAAAGACTATGAAAAGGTGCTTGTTGCAGCAACACGAACTCTCCAGATGAGTTTTGTTTTAGGAGTTGGATTGT
tactaat putative branch site (score: 1)
ttactttctccttttc CT-rich tract
taaaaatcaaatgagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaacatttatcaataaaaaaattataaaggccttaacttcttgaacttcattgtgagtaaaaatcaaatgagtattactaattactttctccttttcagGCAATTCTAGCTTGTTCCTTTGCTGAGAAAGACTATGAAAAGGTGCTTGTTGCAGCAACACGAACTCTCCAGATGAGTTTTGTTTTAGGAGTTGGATTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - -ccttaac
- - - - - - - - - - - - - - - - - - - - cttgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - agtaaaaa