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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagagtcaatccttgatgtttatttctttactcattttaaatttgaatggtattattatctcaaacactccctttttgatccaactgtttggcgaacatacaattattaaatctttccctatttgcattttggattttggatatagatctgacactgttgcatatgactttatttatagGGCCTTGACATTATTGGTGTTCAAATAGTTATCAACCTTGCATGTCCACGTGATCTTACCAG

Basic information

species Glycine max
transcript GLYMA09G15220.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G15220.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv18s0001g14540.t01 (Vitis vinifera), 3'ss of exon 10
gtaagagtcaatccttgatgtttatttctttactcattttaaatttgaatggtattattatctcaaacactccctttttgatccaactgtttggcgaacatacaattattaaatctttccctatttgcattttggattttggatatagatctgacactgttgcatatgactttatttatagGGCCTTGACATTATTGGTGTTCAAATAGTTATCAACCTTGCATGTCCACGTGATCTTACCAG
                                                                              |   | |   |||  || |  ||| |||   | ||  |   ||    ||  ||||   |||| | |  |||||| || || |||    || ||   | | ||||| |||||||| ||||||||||||| |||||| |||  ||||||||| ||||||||||||||
----------------------------------------------------------------------catggacatacacaaggagttcagc-agtataaaatggatgaaaataaacc---atgttttttttttttttggtg-agatctcac-cttttg---gtgcctc--tctgtagGGACTTGACATAATTGGTGTTCAAACAGTTATAAACTATGCATGTCCTCGTGATCTTACCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcattttggattttggatatagatctgacactgttgcatatgactttatttatagGGCCTTGACATTATTGGTGTTCAAATAGTTATCAACCTTGCATGTCCACGTGATCTTACCAG
                      atctgac  putative branch site (score: 3)
                                           ctttattt  putative PPT
                                     atatgactttatttat  TA-rich tract