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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggcccaactctctatattaatgaccgagagactatctagtactatagaattctttatatgttatttgttctaatgtgatataacaacttagttacaactgttgcagGGAACTGAGGAATAATAATATTTCTGATTCAATTCCATCCTTTATTGGCGATTTCCTTAATTTAACCCAGCT

Basic information

species Glycine max
transcript GLYMA09G15200.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G15200.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv12s0055g00590.t01 (Vitis vinifera), 3'ss of exon 35
gtaaggcc-caactctctatatta-atgaccgagagactatctagtactatagaattctttatatgttatttgttctaatgtgatataacaacttagttacaactgttgcagGGAACTGAGGAATAATAATATTTCTGATTCAATTCCATCCTTTATTGGCGATTTCCTTAATTTAACCCAGCT
|||||||  ||    ||||  ||| |  || |   || | | |  |    |     |||| |  |  |  |  |   | |   |||||||||  | |||       |||||| | ||| |||||||||||||| |||||||| ||||||||   |||||| || |     | ||| || |||||
gtaaggcaacatgcttctagcttataaaacagttggattttgttttttccttttgctcttaagcttctgat-atgggatttcaatataacaagatggttgttgt--ttgcagAGTACTAAGGAATAATAATATCTCTGATTCTATTCCATCAAATATTGGAGAATATGGAAGTTTGACTCAGCT

upper sequence: GLYMA09G15200.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv12s0055g00580.t01 (Vitis vinifera), 3'ss of exon 10
gtaaggcc-caactctctatatta-atgaccgagagactatctagtactatagaattctttatatgttatttgttctaatgtgatataacaacttagttacaactgttgcagGGAACTGAGGAATAATAATATTTCTGATTCAATTCCATCCTTTATTGGCGATTTCCTTAATTTAACCCAGCT
|||||||  ||    ||||  ||| |  || |   || | | |  |    |     |||| |  |  |  |  |   | |   |||||||||  | |||       |||||| | ||| |||||||||||||| |||||||| ||||||||   |||||| || |     | ||| || |||||
gtaaggcaacatgcttctagcttataaaacagttggattttattttttccttttgctcttaaccttctgat-atgggatttcaatataacaagatggttgttgt--ttgcagAGTACTAAGGAATAATAATATCTCTGATTCCATTCCATCAAATATTGGAGAATATGGAAGTTTGACTCAGCT

upper sequence: GLYMA09G15200.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv12s0055g00660.t01 (Vitis vinifera), 3'ss of exon 1
gtaaggcc-caactctctatatta-atgaccgagagactatctagtactatagaattctttatatgttatttgttctaatgtgatataacaacttagttacaactgttgcagGGAACTGAGGAATAATAATATTTCTGATTCAATTCCATCCTTTATTGGCGATTTCCTTAATTTAACCCAGCT
|||||||  ||    ||||  ||| |  || |   || | | |  || | |     |||  |  |  |  |  |   | |   |||||||||  |   | |  || |||||| | |||||||||||||||||| |||||||| ||||||||   ||| || || |     | ||| || |||||
gtaaggcaacatgcttctagcttataaaacagttggatttttttttatttttttgctctaaaccttctgat-atgggatttcaatataacaagatg--tccgtcttttgcagAGTACTGAGGAATAATAATATCTCTGATTCCATTCCATCAAATATCGGAGAATATGGAAGTTTGACTCAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttatatgttatttgttctaatgtgatataacaacttagttacaactgttgcagGGAACTGAGGAATAATAATATTTCTGATTCAATTCCATCCTTTATTGGCGATTTCCTTAATTTAACCCAGCT
         ttatttgttctaat  TA-rich tract