Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacatgctcttttctcagtatttgttgtttactcgtttgttgtaccaaactgagtattacatgtttccaatctgcagGCTATAATTGGTGACAGTTCTGTTTTTAATTATTCAAATTACTAGAGAGACTAGACATAGGAAAACCACCGTCGTGGTTTGGAAATTTTCTGAGGGATGT

Basic information

species Glycine max
transcript GLYMA09G10830.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213604252|gb|DB978180.1|DB978180
EST:     CATTGATTAGCTCATGGNNNNNNNTTTGGTCCTATGTATCTAAAACTTAG                         GCTATAATTGGTGACAGTTCTGTTTTTAATTATTCAAATTACTAGAGAGAC
genomic: CATTGATTAGCTCATGGAAAAAAATTTGGTCCTATGTATCTAAAACTTAGgtaacatgct ... caatctgcagGCTATAATTGGTGACAGTTCTGTTTTTAATTATTCAAATTACTAGAGAGAC
EST: gi|21994464|gb|BQ785992.1|BQ785992
EST:     CATTGATTAGCTCATGGNNNNNNNTTTGGTCCTATGTATCTAAAACTTAG                         GCTATAATTGGTGACAGTTCTGTTTTTAATTATTCAAATTACTAGAGAGAC
genomic: CATTGATTAGCTCATGGAAAAAAATTTGGTCCTATGTATCTAAAACTTAGgtaacatgct ... caatctgcagGCTATAATTGGTGACAGTTCTGTTTTTAATTATTCAAATTACTAGAGAGAC
EST: gi|254313613|gb|GR831242.1|GR831242
EST:     CATTGATTAGCTCATGGNNNNNNNTTTGGTCCTATGTATCTAAAACTTAG                         GCTATAATTGGTGACAGTTCTGTTTTTAATTATTCAAATTACTAGAGAGAC
genomic: CATTGATTAGCTCATGGAAAAAAATTTGGTCCTATGTATCTAAAACTTAGgtaacatgct ... caatctgcagGCTATAATTGGTGACAGTTCTGTTTTTAATTATTCAAATTACTAGAGAGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgtttactcgtttgttgtaccaaactgagtattacatgtttccaatctgcagGCTATAATTGGTGACAGTTCTGTTTTTAATTATTCAAATTACTAGAGAGACTAGACATAGGAAAACCACCGTCGTGGTTTGGAAATTTTCTGAGGGATGT
                                       tgtttcc  CT-rich tract
                                tattacat  TA-rich tract