1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...taagcattctgtacgtgaatatattttccccttccatctataagggatcttgtgatgcttgtctattcataaaccaattttttttgcctgtccttttcagCCCGAAATGGATGAACATGCCAGGAAGGCATTTTGCTCTTGGGTTCGTGCGTACACAGCCCATCGCGGTGAGCTGAAAAGAATATTATGATCAAGAAACT
species | Glycine max |
transcript | GLYMA09G08370.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCTGGGTCCTTTGTCTCCAGAAGGCACTTGAAGCCTTCATCATGTCCAAG CCCGAAATGGATGAACATGCCAGGAAGGCATTTTGCTCTTGGGTTCGTGCGEST: gi|10845594|gb|BF071145.1|BF071145
genomic: CCTGGGTCCTTTGTCTCCAGAAGGCACTTGAAGCCTTCATCATGTCCAAGgtgattctca ... tccttttcagCCCGAAATGGATGAACATGCCAGGAAGGCATTTTGCTCTTGGGTTCGTGCG
EST: CCTGGGTCCTTTGTCTCCAGAAAGCACTTGAAGCCTTCATCATGTCCAAA CCCGAAATGGATGAACATGCCAGGAAGGCATTTTEST: gi|193565827|gb|FK525898.1|FK525898
genomic: CCTGGGTCCTTTGTCTCCAGAAGGCACTTGAAGCCTTCATCATGTCCAAGgtgattctca ... tccttttcagCCCGAAATGGATGAACATGCCAGGAAGGCATTTT
EST: CCTGGGTCCTTTGTCTCCAGAAGGCACTTGAAGCCTTCATCATGTCCAAG CCCGAAATGGATGAACATGCCAGGAAGGCATTTTGCTCTTGGGTTCGTGCG
genomic: CCTGGGTCCTTTGTCTCCAGAAGGCACTTGAAGCCTTCATCATGTCCAAGgtgattctca ... tccttttcagCCCGAAATGGATGAACATGCCAGGAAGGCATTTTGCTCTTGGGTTCGTGCG
gatcttgtgatgcttgtctattcataaaccaattttttttgcctgtccttttcagCCCGAAATGGATGAACATGCCAGGAAGGCATTTTGCTCTTGGGTTCGTGCGTACACAGCCCATCGCGGTGAGCTGAAAAGAATATTATGATCAAGAAACT
ttttttttgcctgtcc CT-rich tract
tattcataaaccaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taagcattctgtacgtgaatatattttccccttccatctataagggatcttgtgatgcttgtctattcataaaccaattttttttgcctgtccttttcagCCCGAAATGGATGAACATGCCAGGAAGGCATTTTGCTCTTGGGTTCGTGCGTACACAGCCCATCGCGGTGAGCTGAAAAGAATATTATGATCAAGAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- -gcattct
- - - - - - - - - - - - tttcccc
- - - - - - - - - - - - - - - - -ccatcta
- - - - - - - - - - - - - - - - - - - - - - - - - - tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctattca