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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaattacccaaaacttggcgtttagtcttatggttttataacaaacttatgttttttttatcaaacaacatcaattatactgcacttttgtagtttattatttgtttgtgattattatacacagGTCGCATCATGAAAAACTAGTCATTATTGATAACCATATTTGCTTTATTGGAGGACTTGATTTGTGCTTTGGTCGTTATGACACATCTGAGCATAAAGTG

Basic information

species Glycine max
transcript GLYMA09G04620.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G04620.1 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os01g20860.1 (Oryza sativa), 3'ss of exon 7
gtatgcaattacccaaaacttggcgtttagtcttatggttttataacaaacttatgttttttttatcaaacaacatcaattatactgcacttttgtagtttattatttgtttgtgattattatacacagGTCGCATCATGAAAAACTAGTCATTATTGATAACCATATTTGCTTTATTGGAGGACTTGATTTGTGCTTTGGTCGTTATGACACATCTGAGCATAAAGTG
                                     ||    | | ||  |||   |  |||         |||  | ||   ||||| ||   ||| |  ||||  ||| |  |||    |  |  |||| |||||||| ||| | || ||| ||||||| ||  | |||| ||||||||| |||||||| ||||||||||||||||| ||  ||||||||||||| 
-------------------------------------gtacggtgagaactttacactcattt---------acactattt---ctgcagttaattagatccttatg-gttggctattgccttgaa--gGTCACATCATGAGAAAATCGTTATTGTTGATAATCAAGTATGCTATATTGGAGGCCTTGATTTATGCTTTGGTCGTTATGATACTCCTGAGCATAAAGTT

upper sequence: GLYMA09G04620.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv05s0077g01830.t01 (Vitis vinifera), 3'ss of exon 9
gtatgcaattacccaaaacttggcgtttagtcttatggttttataacaaacttatgttttttttatcaaacaacatcaattatactgcacttttgtagtttattatttgtttgtgattattatacacagGTCGCATCATGAAAAACTAGTCATTATTGATAACCATATTTGCTTTATTGGAGGACTTGATTTGTGCTTTGGTCGTTATGACACATCTGAGCATAAAGTG
                || ||    |  |||| ||| | | ||    | | ||  | | |        |  |    |  || || || | ||||| ||||  | || |  ||    |  ||||| ||||||| || ||||||||||| |||||| ||||| |||| ||||||||||||||||| || ||| | |||||||| |||||||||||||  || || ||||| 
----------gtatgtaatttactttgaagtcctatagatgta----agaattgagctat--------agtatttcctgttgtaatgaatttttgaagttgctgatgtcatttctgt--ttatatacagGTCCCACCATGAAAAACTTGTCATTGTTGATTACCAGATTTGCTTTATTGGAGGTCTGGATCTATGCTTTGGCCGTTATGACACATTGGAACACAAAGTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcaattatactgcacttttgtagtttattatttgtttgtgattattatacacagGTCGCATCATGAAAAACTAGTCATTATTGATAACCATATTTGCTTTATTGGAGGACTTGATTTGTGCTTTGGTCGTTATGACACATCTGAGCATAAAGTG
                ttttgtagtttattat  TA-rich tract